Miyakogusa Predicted Gene

Lj0g3v0075319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0075319.1 tr|G2XMP1|G2XMP1_ORYGL Hypothetical_protein
OS=Oryza glaberrima GN=Ogl11g0094H08_1 PE=4 SV=1,36.75,6e-19,seg,NULL;
GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1,NULL; TRANSCRIPTION
INITIATION FACTOR IIE, ALPH,CUFF.3783.1
         (252 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077000.1 | transcription initiation factor IIE, putative ...   283   9e-77

>Medtr8g077000.1 | transcription initiation factor IIE, putative |
           HC | chr8:32692655-32682881 | 20130731
          Length = 479

 Score =  283 bits (725), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 158/221 (71%), Positives = 170/221 (76%), Gaps = 13/221 (5%)

Query: 14  KPLMDQLSRVKDLPVPEFGSLQAWEXXXXXXXXXXNGDINGGDSKNSQLGYNGAPMPYSG 73
           KPL+DQ+ RVKDLPVPEFGSLQAWE          NGD N GDS    +GYNGAP+PYSG
Sbjct: 249 KPLIDQIGRVKDLPVPEFGSLQAWEARASAAGRAANGD-NAGDS---NMGYNGAPLPYSG 304

Query: 74  DTKVVVDFNGTEVKGEGVKSEAD-TSLKVLPPWMITSGMNLTKEQRGEVKQEMKMDGTST 132
           DTKVVVDFNGTE KG+GVKSE D TSLKVLPPWMITSGMNLTKEQRGEVKQE K DGTST
Sbjct: 305 DTKVVVDFNGTEGKGDGVKSETDSTSLKVLPPWMITSGMNLTKEQRGEVKQETKTDGTST 364

Query: 133 STAAQYTDDKKSSIGHDDNKNIQDEYIKAYYAALLKQQ---EEVAKNQQSVDTQAADDPS 189
           STAAQYTD+KKS+IGHD+ KNIQDEYIKAYYAALLK+Q   EE AK  Q ++T  ADDP 
Sbjct: 365 STAAQYTDEKKSTIGHDE-KNIQDEYIKAYYAALLKKQHELEEAAKIPQDMNT--ADDPF 421

Query: 190 SSTFGRQVGMKSKXXXXXXXXXXXXAPLGGNGNVGYKVDLN 230
           SST  RQ GMKSK            AP+ GNG  GYKVDLN
Sbjct: 422 SSTSNRQAGMKSKRGEDDDGTEWEEAPVRGNG--GYKVDLN 460