Miyakogusa Predicted Gene

Lj0g3v0074089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0074089.1 tr|Q00WR4|Q00WR4_OSTTA Adaptin family protein
(ISS) OS=Ostreococcus tauri GN=Ot13g02690 PE=4
SV=1,35.71,6e-17,seg,NULL; Subdomain of clathrin and coatomer
appendage domain,Coatomer/calthrin adaptor appendage, C,CUFF.3782.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g084610.1 | adaptor protein complex AP-2, alpha subunit | ...   341   2e-94

>Medtr2g084610.1 | adaptor protein complex AP-2, alpha subunit | HC |
            chr2:35817582-35830646 | 20130731
          Length = 1026

 Score =  341 bits (875), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/216 (79%), Positives = 182/216 (84%), Gaps = 2/216 (0%)

Query: 1    MELSLVPETIPPRAQVQCPLEVINLHPSRDVSVLDFSYKFGNEMVNVKLRVPAVLNKFLQ 60
            MELSLVP+TIPPRAQVQCPLE++NLHPSRDV+V+DFSYKFGN+MVNVKLR+PAVLNKFLQ
Sbjct: 811  MELSLVPDTIPPRAQVQCPLEIMNLHPSRDVAVIDFSYKFGNDMVNVKLRLPAVLNKFLQ 870

Query: 61   PITISAEEFFPQWRSLPGPPLKLQEVVRGVRPLPLPEMANLFNSYHLTVCPGLDPNPNNL 120
            PITIS EEFFPQWRSLPGPPLKLQEVVRGVRPLPL EMANLFNS+HL VCPGLDPNPNNL
Sbjct: 871  PITISPEEFFPQWRSLPGPPLKLQEVVRGVRPLPLLEMANLFNSFHLIVCPGLDPNPNNL 930

Query: 121  VISTTFYSESTRAMLCLIRIETDPADRTQLRMTVASGDPALTFEMKEFVKEQLVIIXXXX 180
            V STTFYSESTRAMLCL RIETDPADRTQLRMTVASGDP LTFE+KEF+KEQLV I    
Sbjct: 931  VASTTFYSESTRAMLCLARIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIPLAS 990

Query: 181  XX--XXXXXXXXXLVAQLAIAPATTNDPGALLAALL 214
                              A  PA  NDPGA LAALL
Sbjct: 991  RIPPTHAAPMSPVAQPASAPPPAALNDPGAALAALL 1026