Miyakogusa Predicted Gene

Lj0g3v0073949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0073949.1 Non Characterized Hit- tr|E1ZJ68|E1ZJ68_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,39.46,2e-19,Anticodon-binding domain,Anticodon-binding
domain; AD,Anticodon-binding domain; UNCHARACTERIZED,NULL,CUFF.3699.1
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g063230.1 | anticodon-binding domain protein | HC | chr8:2...   308   2e-84
Medtr8g461280.1 | anticodon-binding domain protein | LC | chr8:2...   264   4e-71

>Medtr8g063230.1 | anticodon-binding domain protein | HC |
           chr8:26483389-26478681 | 20130731
          Length = 188

 Score =  308 bits (788), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/172 (84%), Positives = 159/172 (92%)

Query: 9   EELAIGCILSIRTTLGDEFEGQVVTFDRPSNILILQQGSKHGPHRNFRLLKANYIKDFTF 68
           +E A+GC LSIRTTLGDEFEGQVVTFDR SN L+LQ+GSKHGP RN RLLKA+YIKDFTF
Sbjct: 16  DEFAVGCFLSIRTTLGDEFEGQVVTFDRDSNYLVLQEGSKHGPRRNIRLLKADYIKDFTF 75

Query: 69  LGQAEDPLDPTNCFLDLTALQAREVVAIRQAEADAERIGVGVTSEAQSIFDALSKTLPVR 128
           LGQ +DPLDP +C LD+ ALQ+RE +AIRQAEADAERIGVGVTSEAQ+IFDALSKTLPVR
Sbjct: 76  LGQGQDPLDPNHCLLDINALQSREELAIRQAEADAERIGVGVTSEAQNIFDALSKTLPVR 135

Query: 129 WDKTVIVVMNEVRVGSPYNSDSVIGGTPAANDRVKKVLEFERKRLQLRGSGG 180
           WDKTVIVVMNEVRV SPY+S+ VIGGTPAANDRVKKVLEFERKRLQLRGSGG
Sbjct: 136 WDKTVIVVMNEVRVSSPYHSECVIGGTPAANDRVKKVLEFERKRLQLRGSGG 187


>Medtr8g461280.1 | anticodon-binding domain protein | LC |
           chr8:21535912-21537550 | 20130731
          Length = 324

 Score =  264 bits (674), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 143/176 (81%)

Query: 4   VSNSVEELAIGCILSIRTTLGDEFEGQVVTFDRPSNILILQQGSKHGPHRNFRLLKANYI 63
            +N+ E   +GC+LSIRTT G+EFE QVVTFD  SNIL L +GSK  P R  RLL  +YI
Sbjct: 114 TNNNSEAFVVGCLLSIRTTFGEEFEAQVVTFDHSSNILGLMEGSKDAPLRKIRLLNTDYI 173

Query: 64  KDFTFLGQAEDPLDPTNCFLDLTALQAREVVAIRQAEADAERIGVGVTSEAQSIFDALSK 123
           +DFTFLGQ EDPLDP N ++DL  LQARE +AIRQAEADAERIGVGVTSEAQ+IFDALSK
Sbjct: 174 QDFTFLGQHEDPLDPRNFYVDLNDLQAREELAIRQAEADAERIGVGVTSEAQNIFDALSK 233

Query: 124 TLPVRWDKTVIVVMNEVRVGSPYNSDSVIGGTPAANDRVKKVLEFERKRLQLRGSG 179
           TLPVRWDKTVIVVMNEVR+ SPY+ D V GG PAANDRVKKVLE  RKRLQL  SG
Sbjct: 234 TLPVRWDKTVIVVMNEVRISSPYHPDCVNGGAPAANDRVKKVLEMLRKRLQLPCSG 289