Miyakogusa Predicted Gene

Lj0g3v0073369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0073369.1 Non Characterized Hit- tr|G7KXJ5|G7KXJ5_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,56.52,3e-16,seg,NULL,CUFF.3660.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112740.1 | DNA-binding protein, putative | HC | chr7:4638...    73   6e-14
Medtr7g112740.2 | DNA-binding protein, putative | HC | chr7:4638...    73   6e-14
Medtr1g083390.1 | DNA-binding protein, putative | HC | chr1:3710...    72   1e-13

>Medtr7g112740.1 | DNA-binding protein, putative | HC |
           chr7:46388896-46394836 | 20130731
          Length = 412

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 1   MRTPVAXXXXXXXXXXLLGPLAPGTSSSDNA-RFVYIPNSVPGPNFQEESHLPSRFHPWE 59
           +R PVA             PLA  +S  D +  ++Y+P    G NFQEE+ LPS FH WE
Sbjct: 306 VRPPVASSARRSSGHSRSAPLASLSSPPDQSGSYIYLP----GRNFQEETRLPSHFHAWE 361

Query: 60  RDHSPSLLLNQVG-----RAYHQSASGSDPAM 86
           RDH PS  LNQVG     RAYHQ+ASG+DP  
Sbjct: 362 RDHLPSSSLNQVGRESSWRAYHQTASGTDPGF 393


>Medtr7g112740.2 | DNA-binding protein, putative | HC |
           chr7:46388899-46394879 | 20130731
          Length = 386

 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 53/92 (57%), Gaps = 10/92 (10%)

Query: 1   MRTPVAXXXXXXXXXXLLGPLAPGTSSSDNA-RFVYIPNSVPGPNFQEESHLPSRFHPWE 59
           +R PVA             PLA  +S  D +  ++Y+P    G NFQEE+ LPS FH WE
Sbjct: 280 VRPPVASSARRSSGHSRSAPLASLSSPPDQSGSYIYLP----GRNFQEETRLPSHFHAWE 335

Query: 60  RDHSPSLLLNQVG-----RAYHQSASGSDPAM 86
           RDH PS  LNQVG     RAYHQ+ASG+DP  
Sbjct: 336 RDHLPSSSLNQVGRESSWRAYHQTASGTDPGF 367


>Medtr1g083390.1 | DNA-binding protein, putative | HC |
           chr1:37109750-37117337 | 20130731
          Length = 428

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 53/91 (58%), Gaps = 6/91 (6%)

Query: 1   MRTPVAXXXXXXXXXXLLGPLAPGTSSSDNAR-FVYIPNSVPGPNFQEESHLPSRFHPWE 59
           MR PV+              LAP  +S D +  F  IP+S  G NFQEE+HLPSRFH WE
Sbjct: 318 MRAPVSSVPRRASSHSGSTQLAPVATSPDQSGGFFLIPSSSSGRNFQEENHLPSRFHAWE 377

Query: 60  RDHSPSLLLNQVGRA-----YHQSASGSDPA 85
           RDH PSL L+Q  R      YHQSA+ SDP+
Sbjct: 378 RDHLPSLSLSQGDRDSGWRPYHQSANRSDPS 408