Miyakogusa Predicted Gene
- Lj0g3v0073229.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0073229.1 Non Characterized Hit- tr|B8AZJ8|B8AZJ8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,35.29,0.000000003,ZF_RING_2,Zinc finger, RING-type;
ZF_RING_1,Zinc finger, RING-type, conserved site;
RING/U-box,NULL;,CUFF.3642.1
(461 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g090595.1 | RING zinc finger protein | HC | chr2:38732918-... 463 e-130
Medtr2g090595.2 | RING zinc finger protein | HC | chr2:38732994-... 358 5e-99
Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protei... 271 1e-72
Medtr4g088520.2 | E3 ubiquitin-protein ligase RING1a-like protei... 225 6e-59
Medtr4g091110.1 | C3HC4-type RING zinc finger protein | LC | chr... 124 2e-28
Medtr6g080720.1 | C3HC4-type RING zinc finger protein | LC | chr... 118 1e-26
Medtr4g058600.1 | zinc finger, C3HC4 type (RING finger) protein ... 96 8e-20
Medtr7g056100.1 | hypothetical protein | LC | chr7:19495629-1950... 64 4e-10
Medtr2g018880.1 | breast cancer susceptibility-like protein, put... 53 6e-07
Medtr7g089190.1 | DNA/RNA helicase | HC | chr7:34885684-34881166... 51 2e-06
>Medtr2g090595.1 | RING zinc finger protein | HC |
chr2:38732918-38738851 | 20130731
Length = 504
Score = 463 bits (1192), Expect = e-130, Method: Compositional matrix adjust.
Identities = 248/418 (59%), Positives = 293/418 (70%), Gaps = 5/418 (1%)
Query: 47 EHEEDDYDKSDGSDHAPSPEEKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFC 106
+H +D+ +KS SD + EEK EY+ V L +IRKDVQCPICLGIIKKTRTVMEC+HRFC
Sbjct: 87 QHHDDEKEKSQDSDESSDSEEKPEYVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFC 146
Query: 107 RECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDK 166
RECIDKSMRLGNNECPACRTHCASRRSLRDDPN+DALIA LYP+I+KY +K
Sbjct: 147 RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEK 206
Query: 167 NRNKLIQASIAKVVQRQSEALVKRRRDTP--GAFMTRSQRNQRNVISRRQNPEVDTQGSX 224
NRNK IQASIAKV +RQSEAL K+R+DTP +F+TRSQRNQRN+ SRRQN D QGS
Sbjct: 207 NRNKQIQASIAKVFKRQSEALSKKRKDTPSSSSFVTRSQRNQRNLQSRRQNQASDIQGSE 266
Query: 225 XXXXXXXXXXKDSSADERCTEXXXXXXXXXXXXXXXXXXXXTASPDGGCIESEIGISREN 284
SS DE TE ASPDGG IES++ I+REN
Sbjct: 267 ENEENGNNERDSSSGDEGGTELRQRKRKRWTRVRSSQPSSSMASPDGGSIESDLDINREN 326
Query: 285 QGVSSRQASKPQKLTWGRGGFRSNTXXXXXXXXXXXXXXXXXLAKLVDYLCNLDENTDEF 344
+G +SR +K +KLTWGRGGFRSNT +++LVDYL NL+ENTDEF
Sbjct: 327 RG-TSRLVTKARKLTWGRGGFRSNTRYGSGGGSNGKSSRSGRMSRLVDYLKNLNENTDEF 385
Query: 345 DIHLMLFPLDRQSTPSLQQPHLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVKRCCSTF 404
D+HLM LD+++T L++ HL CRP +SV++L EY+A QTPL VEEVEILAVK C S
Sbjct: 386 DVHLMFVSLDKETTQRLEKLHLCCRPNVSVKNLYEYIASQTPLTVEEVEILAVKGCSSAN 445
Query: 405 CDKSVDEAS--SFDELTPLVIDPSKDELETLQGHEPLTGIKSNCISQRGHLMLAYRRK 460
CDKS DE S FDEL+ LVIDP KDELE LQ HE + I+S I +RGHL+LAY+RK
Sbjct: 446 CDKSADEDSVLDFDELSSLVIDPQKDELEILQAHETVAEIRSKSIFKRGHLILAYKRK 503
>Medtr2g090595.2 | RING zinc finger protein | HC |
chr2:38732994-38739213 | 20130731
Length = 433
Score = 358 bits (919), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 193/335 (57%), Positives = 231/335 (68%), Gaps = 3/335 (0%)
Query: 47 EHEEDDYDKSDGSDHAPSPEEKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFC 106
+H +D+ +KS SD + EEK EY+ V L +IRKDVQCPICLGIIKKTRTVMEC+HRFC
Sbjct: 87 QHHDDEKEKSQDSDESSDSEEKPEYVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFC 146
Query: 107 RECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDK 166
RECIDKSMRLGNNECPACRTHCASRRSLRDDPN+DALIA LYP+I+KY +K
Sbjct: 147 RECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEK 206
Query: 167 NRNKLIQASIAKVVQRQSEALVKRRRDTP--GAFMTRSQRNQRNVISRRQNPEVDTQGSX 224
NRNK IQASIAKV +RQSEAL K+R+DTP +F+TRSQRNQRN+ SRRQN D QGS
Sbjct: 207 NRNKQIQASIAKVFKRQSEALSKKRKDTPSSSSFVTRSQRNQRNLQSRRQNQASDIQGSE 266
Query: 225 XXXXXXXXXXKDSSADERCTEXXXXXXXXXXXXXXXXXXXXTASPDGGCIESEIGISREN 284
SS DE TE ASPDGG IES++ I+REN
Sbjct: 267 ENEENGNNERDSSSGDEGGTELRQRKRKRWTRVRSSQPSSSMASPDGGSIESDLDINREN 326
Query: 285 QGVSSRQASKPQKLTWGRGGFRSNTXXXXXXXXXXXXXXXXXLAKLVDYLCNLDENTDEF 344
+G +SR +K +KLTWGRGGFRSNT +++LVDYL NL+ENTDEF
Sbjct: 327 RG-TSRLVTKARKLTWGRGGFRSNTRYGSGGGSNGKSSRSGRMSRLVDYLKNLNENTDEF 385
Query: 345 DIHLMLFPLDRQSTPSLQQPHLVCRPTLSVRHLCE 379
D+HLM LD+++T L++ HL CRP +SV++L E
Sbjct: 386 DVHLMFVSLDKETTQRLEKLHLCCRPNVSVKNLYE 420
>Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protein,
putative | HC | chr4:35141489-35136880 | 20130731
Length = 440
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 221/398 (55%), Gaps = 33/398 (8%)
Query: 71 YLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTHCAS 130
Y+ ++L ++RK+VQCPICLGII+KTRTVMEC+HRFCRECIDKSMRLGNNECPACRTHCAS
Sbjct: 58 YVAIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCAS 117
Query: 131 RRSLRDDPNFDALIAALYPDIKKYXXXXXXXXXXDKNRNKLIQASIAKVVQRQSEALVKR 190
RRSLRDDPN+DALIAA+YPDI KY + R+K QASIA+ +QRQSEAL K+
Sbjct: 118 RRSLRDDPNYDALIAAIYPDIDKYEEEELALHEDEMTRHKQFQASIAQTLQRQSEALSKK 177
Query: 191 R--RDTPGAFMTRSQRNQRNV-ISRRQN--PEVDTQ-GSXXXXXXXXXXXKDSSADERCT 244
R + T AFM RS+ N R + RR+N D Q S KDSS+D+ T
Sbjct: 178 RNAKATAAAFMRRSKGNYRTSHLRRRRNIRNAGDFQVSSDNNGMNDNDGEKDSSSDDGQT 237
Query: 245 EXXXXX-XXXXXXXXXXXXXXXTASPDGGCIESEIGISRENQGVSSRQASKPQKLTWGRG 303
E + PDG E+ + RE S L+WG+
Sbjct: 238 ETQPRRCKKGAEQETQFPRHSASTDPDGIGDETPPEVHREIISASG-------TLSWGKN 290
Query: 304 GFRSNTXXXXXXXXXXXXXXXXXLAKLVDYLCNLDENTDEFDIHLMLFPLDRQSTPSLQQ 363
G RS++ ++KLV++L +L N E + L L D Q P+L++
Sbjct: 291 GHRSHS------RVNGKNAKNNRISKLVEHLSSLAANGYELPVFLKLVSFDEQRLPNLEE 344
Query: 364 PHLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVKRCCSTFCDKSVDEASSFDELTPLVI 423
+ C+PT+SV+ LC++VA +T LP EVE+L V + ++ I
Sbjct: 345 SCITCKPTMSVKELCKHVANETALPANEVELLLVLKPRASIVGGES------------TI 392
Query: 424 DPSKDELETLQGHEPLTGIKSNC-ISQRGHLMLAYRRK 460
P +D L L+ E L + + + G+L++AY+RK
Sbjct: 393 GPDRDNLRVLEDQETLAELLGDYENTSYGYLVMAYKRK 430
>Medtr4g088520.2 | E3 ubiquitin-protein ligase RING1a-like protein,
putative | HC | chr4:35140912-35136880 | 20130731
Length = 355
Score = 225 bits (574), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 195/370 (52%), Gaps = 33/370 (8%)
Query: 99 MECMHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDALIAALYPDIKKYXXXX 158
MEC+HRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPN+DALIAA+YPDI KY
Sbjct: 1 MECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAAIYPDIDKYEEEE 60
Query: 159 XXXXXXDKNRNKLIQASIAKVVQRQSEALVKRR--RDTPGAFMTRSQRNQRNV-ISRRQN 215
+ R+K QASIA+ +QRQSEAL K+R + T AFM RS+ N R + RR+N
Sbjct: 61 LALHEDEMTRHKQFQASIAQTLQRQSEALSKKRNAKATAAAFMRRSKGNYRTSHLRRRRN 120
Query: 216 --PEVDTQ-GSXXXXXXXXXXXKDSSADERCTEXXXXX-XXXXXXXXXXXXXXXTASPDG 271
D Q S KDSS+D+ TE + PDG
Sbjct: 121 IRNAGDFQVSSDNNGMNDNDGEKDSSSDDGQTETQPRRCKKGAEQETQFPRHSASTDPDG 180
Query: 272 GCIESEIGISRENQGVSSRQASKPQKLTWGRGGFRSNTXXXXXXXXXXXXXXXXXLAKLV 331
E+ + RE S L+WG+ G RS++ ++KLV
Sbjct: 181 IGDETPPEVHREIISASG-------TLSWGKNGHRSHS------RVNGKNAKNNRISKLV 227
Query: 332 DYLCNLDENTDEFDIHLMLFPLDRQSTPSLQQPHLVCRPTLSVRHLCEYVACQTPLPVEE 391
++L +L N E + L L D Q P+L++ + C+PT+SV+ LC++VA +T LP E
Sbjct: 228 EHLSSLAANGYELPVFLKLVSFDEQRLPNLEESCITCKPTMSVKELCKHVANETALPANE 287
Query: 392 VEILAVKRCCSTFCDKSVDEASSFDELTPLVIDPSKDELETLQGHEPLTGIKSNC-ISQR 450
VE+L V + ++ I P +D L L+ E L + + +
Sbjct: 288 VELLLVLKPRASIVGGES------------TIGPDRDNLRVLEDQETLAELLGDYENTSY 335
Query: 451 GHLMLAYRRK 460
G+L++AY+RK
Sbjct: 336 GYLVMAYKRK 345
>Medtr4g091110.1 | C3HC4-type RING zinc finger protein | LC |
chr4:36070700-36067211 | 20130731
Length = 252
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 67 EKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRT 126
EK EY + L + +++CPIC GII+KT+T+ EC+HRFC ECI+K MR G NECP CRT
Sbjct: 81 EKEEYASIDLSSMY-EIECPICFGIIRKTKTIRECLHRFCEECINKCMRFGKNECPVCRT 139
Query: 127 HCASRRSLRDDPNFDALIAALYPDIKKY 154
HC + SLRDDPN+DALIA L PDI K+
Sbjct: 140 HCPDQLSLRDDPNYDALIALLCPDIDKF 167
>Medtr6g080720.1 | C3HC4-type RING zinc finger protein | LC |
chr6:29026452-29024545 | 20130731
Length = 198
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 71 YLLVRLQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTHCAS 130
Y+ + L I +++CPIC GI++KT+T+ +C+HRFC ECI+K MR G NECP CRTHC +
Sbjct: 26 YVSIDLSNIH-EIECPICFGILRKTKTIRKCLHRFCGECIEKCMRSGKNECPICRTHCPT 84
Query: 131 RRSLRDDPNFDALIAALYPDIKKY 154
+ SLRDDPN+DALIA L+PDI K+
Sbjct: 85 QLSLRDDPNYDALIALLHPDIDKF 108
>Medtr4g058600.1 | zinc finger, C3HC4 type (RING finger) protein |
LC | chr4:21548036-21547417 | 20130731
Length = 78
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 47/55 (85%)
Query: 99 MECMHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDALIAALYPDIKK 153
MECMHRFC+ CIDK MR G NECP CRTH SRR+LRDDPN+DALIAA+YP+I K
Sbjct: 1 MECMHRFCKVCIDKCMRRGTNECPTCRTHFPSRRALRDDPNYDALIAAIYPNIDK 55
>Medtr7g056100.1 | hypothetical protein | LC |
chr7:19495629-19503809 | 20130731
Length = 163
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 21/127 (16%)
Query: 339 ENTDEFDIHLMLFPLDRQSTPSLQQPHLVCRPTLSVRHLCEYVACQTPLPVEEVEILAVK 398
E ++E DI + L L++ P+L++P C+P + +Y+A +T L EE+E+ VK
Sbjct: 44 EKSNESDIFIKLLSLEKVKVPNLERPFFTCKPATLISQFYQYIAFETSLQTEEIELFVVK 103
Query: 399 RCCS--TFCDKSVDEASSFDELTPLVIDPSKDELETLQGHEPLTG---IKSNCISQRGHL 453
C F D + +DPS + E L E + I +N I RG+L
Sbjct: 104 ECNPNIIFGDAN--------------LDPSNMKFEFLTREEETSFAEIIPNNLI--RGYL 147
Query: 454 MLAYRRK 460
++AY++K
Sbjct: 148 VIAYKKK 154
>Medtr2g018880.1 | breast cancer susceptibility-like protein,
putative | HC | chr2:6018865-6024557 | 20130731
Length = 1006
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 76 LQEIRKDVQCPICLGIIKKTRTVMECMHRFCRECIDKSMRLGNNECPACRTHCASRRSLR 135
L+++ ++++CPICLG++ + + C H FC CI KSM+ ++ CP C+ +RR +R
Sbjct: 4 LEKMGRELKCPICLGLL-HSAVSLTCNHLFCNSCIFKSMKSASS-CPVCKIP-FTRREVR 60
Query: 136 DDPNFDALIAALYPDIK 152
P+ D L+ +Y +++
Sbjct: 61 PAPHIDNLV-TIYKNME 76
>Medtr7g089190.1 | DNA/RNA helicase | HC | chr7:34885684-34881166 |
20130731
Length = 822
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 53 YDKSDGSDHAPSPEEKSEYLLVRLQEIRKDVQCPICLGIIKKTRTVMEC-MHRFCRECID 111
+ +D D + +PE L+R+ + +D CPICL T V+ C H FCRECI
Sbjct: 543 FSSTDIEDVSKNPELLQT--LIRMLQDGEDFDCPICLS--PPTDIVITCCAHIFCRECIL 598
Query: 112 KSMRLGNNECPACRTHCASRRSLRDDPNFDA 142
K+++ N+ CP C RRSL + F A
Sbjct: 599 KTLQRSNSSCPLC------RRSLSETELFSA 623