Miyakogusa Predicted Gene

Lj0g3v0073129.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0073129.3 Non Characterized Hit- tr|B8BA98|B8BA98_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,41.46,2e-18,9-CIS-EPOXYCAROTENOID DIOXYGENASE,NULL;
BETA-CAROTENE DIOXYGENASE,Carotenoid oxygenase;
RPE65,Carote,CUFF.3638.3
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g110195.1 | retinal pigment epithelial membrane protein | ...   296   7e-81
Medtr8g037290.1 | carotenoid 9,10(9',10')-cleavage dioxygenase |...    55   3e-08
Medtr8g037275.1 | carotenoid 9,10(9',10')-cleavage dioxygenase |...    53   1e-07
Medtr8g037310.1 | carotenoid 9,10(9',10')-cleavage dioxygenase |...    48   5e-06
Medtr8g037315.1 | carotenoid cleavage dioxygenase | HC | chr8:13...    48   7e-06
Medtr5g025270.1 | carotenoid cleavage dioxygenase 4a-6 | HC | ch...    47   8e-06

>Medtr3g110195.1 | retinal pigment epithelial membrane protein | HC
           | chr3:51201204-51196407 | 20130731
          Length = 586

 Score =  296 bits (758), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 146/193 (75%), Positives = 161/193 (83%), Gaps = 12/193 (6%)

Query: 1   MLHALYFKKSSHGNWTVLYNNKQVETETYKLEKQRNKPSLLPATEGDSPAILLSYLLNLL 60
           MLHALYFKKS+HG+WTVLYNNK VETETYKLEKQRNKP  LPA EG+S AIL +YL N L
Sbjct: 147 MLHALYFKKSNHGSWTVLYNNKHVETETYKLEKQRNKPLFLPAIEGNSLAILSAYLFNWL 206

Query: 61  RFGKANKYLSNTSVFEHSGKFYSAAEIHIPQEIDIFTLKTLNNWDVNGAWDRPFTSHPKK 120
           R GK NKY+SNT+VFEHSGKFYS AE H+PQEIDIF+LKTLNNW+++ AW+RPFTSHPKK
Sbjct: 207 RSGKVNKYISNTNVFEHSGKFYSVAESHMPQEIDIFSLKTLNNWELSAAWNRPFTSHPKK 266

Query: 121 APGTGELVTLGVAPAKPFVVVGIFSADGNKLIHKVDLKLN------------RYNVIIDF 168
           AP TGELVTLGV P KPF VVGI SADG KL+HKVD+KLN            RYNVI+DF
Sbjct: 267 APITGELVTLGVEPIKPFAVVGIISADGKKLVHKVDIKLNRCSLCHDIGVTQRYNVIMDF 326

Query: 169 PPTIDLNRLLRGG 181
           P TIDLNRLLRGG
Sbjct: 327 PLTIDLNRLLRGG 339


>Medtr8g037290.1 | carotenoid 9,10(9',10')-cleavage dioxygenase | HC
           | chr8:13873459-13869022 | 20130731
          Length = 575

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 70  SNTSVFEHSGKFYSAAEIHIPQEIDIFT---LKTLNNWDVNGAWDRPFTSHPKKAPGTGE 126
           +NT +  H+GK  + +E   P  I +F    L TL   D +   D  FTSHPK  P TGE
Sbjct: 208 ANTGLVYHNGKLLALSERDKPYAIKVFEDGDLHTLGILDYDKRLDHYFTSHPKLDPYTGE 267

Query: 127 LVTLGVAPAKPFVVVGIFSADG 148
           + T G A   P++   + S DG
Sbjct: 268 MFTFGYAQTPPYITYRVISKDG 289


>Medtr8g037275.1 | carotenoid 9,10(9',10')-cleavage dioxygenase | HC
           | chr8:13854442-13849769 | 20130731
          Length = 575

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 70  SNTSVFEHSGKFYSAAEIHIPQEIDIFT---LKTLNNWDVNGAWDRPFTSHPKKAPGTGE 126
           +NT +  H+GK  + +E   P  I +F    L TL   D     D  FT+HPK  P TGE
Sbjct: 208 ANTGLVYHNGKLLALSERDKPYAIKVFEDGDLHTLGMLDYEKRLDHYFTAHPKVDPFTGE 267

Query: 127 LVTLGVAPAKPFVVVGIFSADG 148
           + T G +   P++   + S DG
Sbjct: 268 MFTFGYSQTPPYITYRVISKDG 289


>Medtr8g037310.1 | carotenoid 9,10(9',10')-cleavage dioxygenase | HC
           | chr8:13895762-13890670 | 20130731
          Length = 575

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 70  SNTSVFEHSGKFYSAAEIHIPQEIDIFT---LKTLNNWDVNGAWDRPFTSHPKKAPGTGE 126
           +NT +  H+    + +E   P  I +F    L TL   D +   D  FT+HPK  P TG+
Sbjct: 208 ANTGLVYHNAMLLALSERDKPYAIKVFEDGDLHTLGMLDYDKRLDHYFTAHPKVDPFTGD 267

Query: 127 LVTLGVAPAKPFVVVGIFSADG 148
           + T G +   P++   + S DG
Sbjct: 268 MFTFGYSQTPPYITYRVISKDG 289


>Medtr8g037315.1 | carotenoid cleavage dioxygenase | HC |
           chr8:13903093-13896651 | 20130731
          Length = 540

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 70  SNTSVFEHSGKFYSAAEIHIPQEIDIFT---LKTLNNWDVNGAWDRPFTSHPKKAPGTGE 126
           +NT++  H  K  + +E   P  I +F    L+TL   D +      FT+HPK  P TGE
Sbjct: 171 ANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGE 230

Query: 127 LVTLGVAPAKPFVVVGIFSADG 148
           + T G +   P++   + S DG
Sbjct: 231 MFTFGYSHTPPYITYRVISKDG 252


>Medtr5g025270.1 | carotenoid cleavage dioxygenase 4a-6 | HC |
           chr5:10254367-10256492 | 20130731
          Length = 581

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 18/180 (10%)

Query: 1   MLHALYFKKSSHGNWTVLYNNKQVETETYKLEKQRNKPSLLPATEGDSPAILLSYLLNLL 60
           MLHA+     S+G  T+   ++ V+T  YK+E +     L+P       +++ S     +
Sbjct: 157 MLHAITI---SNGKATLC--SRYVQTYKYKIENEAGY-QLIPNVFSGFNSLIASAARGSV 210

Query: 61  RFGK--ANKY-------LSNTSVFEHSGKFYSAAEIHIPQEIDIF---TLKTLNNWDVNG 108
              +  + +Y       L+NTS+     K ++  E  +P EI++     ++T+  +D NG
Sbjct: 211 TAARVISGQYNPSNGIGLANTSLALFGNKLFALGESDLPYEINLTPNGDIQTIGRYDFNG 270

Query: 109 AWDRPFTSHPKKAPGTGELVTLGVAPAKPFVVVGIFSADGNKLIHKVDLKLNRYNVIIDF 168
                 T+HPK    TGE       P  PF+    F A+G K        + R + + DF
Sbjct: 271 KLSMSMTAHPKIDGDTGETFAFRYGPMPPFLTYFRFDANGVKHNDVPVFSMTRPSFLHDF 330