Miyakogusa Predicted Gene

Lj0g3v0072839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0072839.1 CUFF.3604.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g082190.2 | INO80 complex subunit C | HC | chr3:37103576-3...   243   3e-65
Medtr3g082190.1 | INO80 complex subunit C | HC | chr3:37103423-3...   243   3e-65

>Medtr3g082190.2 | INO80 complex subunit C | HC |
           chr3:37103576-37100506 | 20130731
          Length = 129

 Score =  243 bits (620), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 112/124 (90%), Positives = 121/124 (97%)

Query: 1   MEAEVVDAELVLPNYLSFKRVQMHEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDQPNYV 60
           MEAEVVDAELVLPNYLSFKR+QM++KYPKGQSRGRHWKHLKQIIQAENYQNYPPD+PNYV
Sbjct: 6   MEAEVVDAELVLPNYLSFKRIQMYDKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 65

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDP+T LRYANTDVFK+IR+LPN+ VQRYL +RNAA
Sbjct: 66  NIESPPSMHPCKRICDITGYEAPYYDPKTNLRYANTDVFKMIRSLPNESVQRYLGMRNAA 125

Query: 121 VVLK 124
           VVLK
Sbjct: 126 VVLK 129


>Medtr3g082190.1 | INO80 complex subunit C | HC |
           chr3:37103423-37100714 | 20130731
          Length = 129

 Score =  243 bits (620), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 112/124 (90%), Positives = 121/124 (97%)

Query: 1   MEAEVVDAELVLPNYLSFKRVQMHEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDQPNYV 60
           MEAEVVDAELVLPNYLSFKR+QM++KYPKGQSRGRHWKHLKQIIQAENYQNYPPD+PNYV
Sbjct: 6   MEAEVVDAELVLPNYLSFKRIQMYDKYPKGQSRGRHWKHLKQIIQAENYQNYPPDEPNYV 65

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDP+T LRYANTDVFK+IR+LPN+ VQRYL +RNAA
Sbjct: 66  NIESPPSMHPCKRICDITGYEAPYYDPKTNLRYANTDVFKMIRSLPNESVQRYLGMRNAA 125

Query: 121 VVLK 124
           VVLK
Sbjct: 126 VVLK 129