Miyakogusa Predicted Gene

Lj0g3v0072759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0072759.1 Non Characterized Hit- tr|I1LLV5|I1LLV5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,66.83,0,seg,NULL;
GIY-YIG,UvrABC system subunit C, N-terminal; FAMILY NOT NAMED,NULL;
coiled-coil,NULL,CUFF.3596.1
         (401 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g466410.1 | endo/excinuclease amino terminal domain protei...   467   e-132
Medtr0003s0480.1 | structure-specific endonuclease subunit SLX1-...    50   3e-06

>Medtr3g466410.1 | endo/excinuclease amino terminal domain protein |
           HC | chr3:27284013-27280966 | 20130731
          Length = 413

 Score =  467 bits (1202), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/368 (66%), Positives = 267/368 (72%), Gaps = 9/368 (2%)

Query: 40  FFACYLLASLNPRFKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFP 99
           FFACYLLASLNPRFKGHTYIGFTVNPRRRIRQHNGEIG GAWRTKK+RPWEMVLCIYGFP
Sbjct: 49  FFACYLLASLNPRFKGHTYIGFTVNPRRRIRQHNGEIGSGAWRTKKKRPWEMVLCIYGFP 108

Query: 100 TNVSALQFEWAWQHPVESLAVRKAAVNFKSLSGIANKIKLAYTMLTLPSWENMNMTVHFF 159
           TNV+ALQFEWAWQHPVESLAVRKAAV FKSLSGIANKIKLAYTMLTLPSW+NMNMTV+FF
Sbjct: 109 TNVAALQFEWAWQHPVESLAVRKAAVEFKSLSGIANKIKLAYTMLTLPSWQNMNMTVNFF 168

Query: 160 STKYMKHCGGCPNLPEHMKVETGSMDELPCYTERIDGLSENEDD----VEF-ENNASTSG 214
           STKYMKHC GCPNLPEHM VE G MDELPCYTERIDGL ENEDD    VEF +NNASTSG
Sbjct: 169 STKYMKHCAGCPNLPEHMTVEIGLMDELPCYTERIDGLVENEDDITDEVEFDDNNASTSG 228

Query: 215 SVPVASDDSLTLDSPKSPNHWDRISEAFGGSKESEAREPPGHPSTTENPSLSFGLITTTP 274
           SVP ASDDS+T DS KSPNH D+I+E  G +KESE REP  H  T +  S  FG I++  
Sbjct: 229 SVPDASDDSVTDDSQKSPNHSDKITEPLGQNKESEVREPQNHSFTRQEQSELFGSISSPK 288

Query: 275 V-KSSPVASSKRVGTITENPSQSFGFIXXXXXXXXXXXXXXRVEIIEDADLLNVMNKSDG 333
             K S V          +  SQ FG I              R  +IED D L+   KS  
Sbjct: 289 GNKESEVREPPSHLFTLQEQSQPFGLILSPEGKSSLATSSKR-GVIEDTDFLSSAIKSS- 346

Query: 334 ELSQPESVKSDAVDVNSTFIVPHEAEIVDLSTPSPSWRNIIDXXXXXXXXXXGSNFIDLT 393
            +    S ++  + V      PH+AEI+DLSTPSPS R++ID           S FIDLT
Sbjct: 347 -VGSYNSEQTGVIGVRGASFAPHQAEIIDLSTPSPSCRSVIDRKKRKVSSSVSSEFIDLT 405

Query: 394 KSPNFVQL 401
           KSPNF+QL
Sbjct: 406 KSPNFIQL 413


>Medtr0003s0480.1 | structure-specific endonuclease subunit
           SLX1-like protein | HC | scaffold0003:241172-248944 |
           20130731
          Length = 168

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 41  FACYLLASLNPRFKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPT 100
           +  YL+ S N   K  TY+G T N  RR+++HNG++  GA  ++  RPW     + GF  
Sbjct: 42  WCVYLILSTNHPIK--TYVGVTTNFPRRLKEHNGDLKGGAKASRAGRPWICACIVCGFTN 99

Query: 101 NVSALQFEWAWQ 112
              A  FE  W+
Sbjct: 100 RSEACVFESKWK 111