Miyakogusa Predicted Gene

Lj0g3v0072049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0072049.1 Non Characterized Hit- tr|F6HBG5|F6HBG5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,63.64,0.000000000000004, ,CUFF.3542.1
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g093000.1 | glycoprotein family protein | HC | chr5:406019...   108   1e-24

>Medtr5g093000.1 | glycoprotein family protein | HC |
           chr5:40601916-40605994 | 20130731
          Length = 221

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/71 (71%), Positives = 61/71 (85%), Gaps = 1/71 (1%)

Query: 10  RVSPPSPFSIVKGALDSNGPVLKRSYGEEEVIVYVMRLSS-ADDDDGAVGQLFIHVDVSK 68
           +VSPPS F+IVKGALDS GPVLKR+YGEEE+ +YVMRL++  ++ DGA+ QLFIHVDVSK
Sbjct: 55  KVSPPSNFTIVKGALDSEGPVLKRNYGEEEISIYVMRLNNIGEEQDGAIDQLFIHVDVSK 114

Query: 69  PTQNESLIFLC 79
           P Q ESL FLC
Sbjct: 115 PEQKESLNFLC 125