Miyakogusa Predicted Gene
- Lj0g3v0071309.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0071309.1 tr|Q0DNJ3|Q0DNJ3_ORYSJ Os03g0750100 protein
OS=Oryza sativa subsp. japonica GN=Os03g0750100 PE=4
SV=,45.54,0.00000000000001,TPR_REGION,Tetratricopeptide
repeat-containing domain; TPR-like,NULL; coiled-coil,NULL;
TPR_11,NULL;,CUFF.3491.1
(360 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g084100.1 | TPR domain protein | HC | chr1:37523477-375174... 65 7e-11
Medtr5g012030.1 | stress-inducible protein, putative | HC | chr5... 62 1e-09
Medtr2g078020.1 | TPR repeat thioredoxin TTL1-like protein | HC ... 55 9e-08
Medtr2g078020.2 | TPR repeat thioredoxin TTL1-like protein | HC ... 55 1e-07
Medtr7g115280.1 | ankyrin repeat protein | HC | chr7:47617510-47... 54 2e-07
Medtr8g107280.1 | translocon at the outer membrane ofs-like prot... 53 5e-07
Medtr7g053470.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ... 50 4e-06
Medtr1g041435.1 | RNA polymerase II-associated-like protein | HC... 50 5e-06
>Medtr1g084100.1 | TPR domain protein | HC | chr1:37523477-37517409
| 20130731
Length = 462
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 35 KEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQTSILFANRAHVNLMLGNLRRALTDA 94
K+ GN+F K K + +AIDCY+R+I + S T++ +ANRA ++ L + A D
Sbjct: 95 KDLGNEFFKQ--KKFKEAIDCYSRSI-----AFSPTAVAYANRAMAHIKLRRFQEAEDDC 147
Query: 95 HQALNLCPTNIKAIYRAAKASFSLNLLAEAQDICQKGLQLDPDNEELKK 143
+ALNL IKA R A A L E+ + + ++L+P+N+E+KK
Sbjct: 148 TEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKK 196
>Medtr5g012030.1 | stress-inducible protein, putative | HC |
chr5:3556121-3551280 | 20130731
Length = 581
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 12 LTESEKA--DLEAIAALKESTAIELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQ 69
L E+EKA +LE + A E +EKGN++ K + Y +AI YT +I +N Q
Sbjct: 371 LNEAEKAKKELEQQEYFDPNLADEEREKGNEYFKQ--QKYPEAIKHYTESIKRN----PQ 424
Query: 70 TSILFANRAHVNLMLGNLRRALTDAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQDICQ 129
++NRA LG + L DA + + L PT K R F + +A + Q
Sbjct: 425 NPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQ 484
Query: 130 KGLQLDPDNEEL 141
+GL+ D +N+EL
Sbjct: 485 EGLKHDANNQEL 496
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 31 AIELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQTSILFANRAHVNLMLGNLRRA 90
A E K KGN G+ +S AI ++ AI+ + +H +L++NR+ L N A
Sbjct: 2 ADEAKAKGNAAFSSGD--FSTAIRHFSEAIDLSPTNH----VLYSNRSAAYASLQNYTDA 55
Query: 91 LTDAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQDICQKGLQLDPDNEELK 142
LTDA + + L P K R A L+ +A +KGL++DP+NE LK
Sbjct: 56 LTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDDAVSAYKKGLEIDPNNEPLK 107
>Medtr2g078020.1 | TPR repeat thioredoxin TTL1-like protein | HC |
chr2:32334950-32330878 | 20130731
Length = 696
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 33 ELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQTSILFANRAHVNLMLGNLRRALT 92
ELK+ GN+ K G H+SDA+ Y RAI+ + S S S NRA LG L A+
Sbjct: 223 ELKKAGNEHYKKG--HFSDALSLYDRAISMSPGSASYRS----NRAAALTGLGRLAEAVK 276
Query: 93 DAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQD-ICQKGLQLDPDNEELKKLNL 146
+ +A+ L P +A YR A L + A+ +C GL DP E++KL +
Sbjct: 277 ECEEAVRLDPNYSRAHYRLASLFIRLGQVENARKHLCHPGLTPDPT--EMQKLKM 329
>Medtr2g078020.2 | TPR repeat thioredoxin TTL1-like protein | HC |
chr2:32334950-32330878 | 20130731
Length = 636
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 33 ELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQTSILFANRAHVNLMLGNLRRALT 92
ELK+ GN+ K G H+SDA+ Y RAI+ + S S S NRA LG L A+
Sbjct: 223 ELKKAGNEHYKKG--HFSDALSLYDRAISMSPGSASYRS----NRAAALTGLGRLAEAVK 276
Query: 93 DAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQD-ICQKGLQLDPDNEELKKLNL 146
+ +A+ L P +A YR A L + A+ +C GL DP E++KL +
Sbjct: 277 ECEEAVRLDPNYSRAHYRLASLFIRLGQVENARKHLCHPGLTPDPT--EMQKLKM 329
>Medtr7g115280.1 | ankyrin repeat protein | HC |
chr7:47617510-47611672 | 20130731
Length = 461
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 13 TESEKADLEAIAALKESTAIELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQTSI 72
T S++ ++ ++ + A E K +G++ K + H AID YT+AI+ N
Sbjct: 317 TVSQEQNIPEVSPEAKKRAAESKSRGDEAFKRNDYHT--AIDSYTQAIDLN----PSDGT 370
Query: 73 LFANRAHVNLMLGNLRRALTDAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQDICQKGL 132
LF+NR+ + LG +AL DA L P KA YR A L EA + +G+
Sbjct: 371 LFSNRSLCWMKLGQAEQALADAKACRALRPDWSKACYREGAALRLLLRFDEAANAFYEGV 430
Query: 133 QLDPDNEEL 141
LDP+++EL
Sbjct: 431 TLDPESKEL 439
>Medtr8g107280.1 | translocon at the outer membrane ofs-like protein
| HC | chr8:45327392-45334135 | 20130731
Length = 594
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 16 EKADLEAIAAL------KESTAIELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQ 69
E+AD+ A + KE +A KEKGNQ K +K + AI YT AI
Sbjct: 458 EQADIAATSKASRNVVSKEQSAEIAKEKGNQAYK--DKQWQKAIGFYTEAIKLCG----N 511
Query: 70 TSILFANRAHVNLMLGNLRRALTDAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQDICQ 129
+ ++NRA L LG+ +A D +A++L ++KA +R A L EA D +
Sbjct: 512 NATYYSNRAQAYLELGSYLQAEADCTKAISLDKKSVKAYFRRGTAREMLGYYKEAIDDFK 571
Query: 130 KGLQLDPDN-------EELKKL 144
L L+P N E L+KL
Sbjct: 572 YALVLEPTNKRAASAAERLRKL 593
>Medtr7g053470.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
HC | chr7:18851017-18844062 | 20130731
Length = 544
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 14 ESEKADLEAIAALKESTAIELKEKGNQFVKMGNKHYSDAIDCYTRAIN-----------Q 62
E EK + K A + KE+GN K G Y A Y +A +
Sbjct: 377 EKEKESWDMNTQEKIEAAGKKKEEGNVLFKAG--KYERASKRYDKAAKYIEYDSSFSEEE 434
Query: 63 NALSHSQTSILFANRAHVNLMLGNLRRALTDAHQALNLCPTNIKAIYRAAKASFSLNLLA 122
LS + + N A L L + A + L++ TN+KA+YR A+AS L L
Sbjct: 435 KKLSKTLKIASYLNNAACKLKLKEYKDAEKLCTKVLDIESTNVKALYRRAQASMQLTDLD 494
Query: 123 EAQDICQKGLQLDPDNEELK 142
A+ +K L++DPDN E+K
Sbjct: 495 LAEIDIKKALEVDPDNREVK 514
>Medtr1g041435.1 | RNA polymerase II-associated-like protein | HC |
chr1:15516239-15508773 | 20130731
Length = 324
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 23 IAALKESTA--IELKEKGNQFVKMGNKHYSDAIDCYTRAINQNALSHSQTSILFANRAHV 80
+A KE T+ I LK++GN+F K G Y A YT+AI ++ LF+NRA
Sbjct: 1 MAERKEGTSCEISLKDQGNEFFKSGK--YLKAAALYTQAIKKDP----SNPTLFSNRAAA 54
Query: 81 NLMLGNLRRALTDAHQALNLCPTNIKAIYRAAKASFSLNLLAEAQDICQKGLQLDPDNEE 140
L L L +AL DA + L P K +R ++ +A Q Q +P ++E
Sbjct: 55 LLQLDKLNKALDDAEMTIKLKPEWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQE 114
Query: 141 ----LKKLN 145
+KK+N
Sbjct: 115 VLKKIKKIN 123