Miyakogusa Predicted Gene
- Lj0g3v0069809.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0069809.1 tr|B9H4K8|B9H4K8_POPTR DNA topoisomerase
OS=Populus trichocarpa GN=POPTRDRAFT_861019 PE=3
SV=1,79.24,0,PRTPISMRASEI,DNA topoisomerase, type IA;
TOPOISOMERASE_I_PROK,DNA topoisomerase, type IA, active
sit,CUFF.3360.1
(452 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g096640.1 | DNA topoisomerase | HC | chr3:44222682-4420848... 721 0.0
Medtr5g061930.2 | DNA topoisomerase | HC | chr5:25738278-2573623... 227 2e-59
Medtr5g061930.1 | DNA topoisomerase | HC | chr5:25738278-2573529... 227 2e-59
Medtr3g084800.2 | DNA topoisomerase I | HC | chr3:38297420-38308... 175 7e-44
Medtr3g084800.1 | DNA topoisomerase I | HC | chr3:38297430-38308... 175 8e-44
Medtr1g009315.2 | DNA topoisomerase I, bacterial protein | HC | ... 50 5e-06
Medtr1g009315.1 | DNA topoisomerase I, bacterial protein | HC | ... 50 5e-06
>Medtr3g096640.1 | DNA topoisomerase | HC | chr3:44222682-44208485 |
20130731
Length = 956
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/421 (81%), Positives = 370/421 (87%), Gaps = 2/421 (0%)
Query: 10 KFLKVAEELYQTGFISYPRTETDSFSPRTNLHAIVQEQQGHPEWGIYAQRLLDPEAGLWR 69
+ +KVAEELYQ GFISYPRTETD+FS RT+LHAIVQEQQGHPEWGIYAQRLLDP AGLWR
Sbjct: 323 RTMKVAEELYQGGFISYPRTETDNFSSRTDLHAIVQEQQGHPEWGIYAQRLLDPGAGLWR 382
Query: 70 NPRGGGHDDKAHPPIHPTKFSAGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVEID 129
NPRGGGHDD+AHPPIHPTKFSAGESGWSQ+HRKLYELVVRHFLACVSKPA+GAETTVEID
Sbjct: 383 NPRGGGHDDQAHPPIHPTKFSAGESGWSQDHRKLYELVVRHFLACVSKPALGAETTVEID 442
Query: 130 IAGELFSACGRVILEKNYLDVYPFETWGGSLIPTYTVGQQFTPTALTLDSGVTRPPPLLS 189
IAGE FSACGRVILE+NYLD+Y ++ W GS+IP Y +G+QF PT LTLD G T PPPLLS
Sbjct: 443 IAGERFSACGRVILERNYLDIYIYDRWDGSMIPNYAIGEQFIPTTLTLDPGKTNPPPLLS 502
Query: 190 EADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDIEMAY 249
EADLLS MDKE IGTDATMHDHIKKLLDRFYATKDA+ FTPTNLGEALVMGYDD M Y
Sbjct: 503 EADLLSRMDKECIGTDATMHDHIKKLLDRFYATKDANMCFTPTNLGEALVMGYDD--MGY 560
Query: 250 KLWKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLEAMSIFFQR 309
KLWKP+LR+ ME DMKSVSEG K K VL TSL +MK CFL ARLNKVKLLEAM+IFF+R
Sbjct: 561 KLWKPDLRAVMERDMKSVSEGNKSKAEVLDTSLQQMKTCFLDARLNKVKLLEAMAIFFER 620
Query: 310 SNRSAGDELHATGEVVRRCGLCQESDMVLKKNRDGNFMVGCLGFPQCRNAVWLPGSVSEA 369
NR DE + TG VVRRC LCQESDMVLKKNRDGNFMVGC +PQCR+ VWLPGS+SEA
Sbjct: 621 LNRVGSDEQNGTGVVVRRCRLCQESDMVLKKNRDGNFMVGCRSYPQCRSVVWLPGSISEA 680
Query: 370 AVTTNPCNFCTPGPVYRIQLKFRQLEIPPNYNINHLGCIGGCDEILRQLTEICGTGPRMP 429
VTTN CN CTPGPVY IQ KF+QL+IPP+YN+NHLGCIGGCDEIL QLTEICGTG RMP
Sbjct: 681 VVTTNACNNCTPGPVYLIQFKFQQLKIPPSYNVNHLGCIGGCDEILTQLTEICGTGSRMP 740
Query: 430 G 430
Sbjct: 741 A 741
>Medtr5g061930.2 | DNA topoisomerase | HC | chr5:25738278-25736234 |
20130731
Length = 438
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 163/274 (59%), Gaps = 9/274 (3%)
Query: 12 LKVAEELYQTGFISYPRTETDSFSPRTN-LHAIVQEQQGHPEWGIYAQRLLDPEAGLWRN 70
+ AE+LY FISYPRTETD FS T L +IV +Q H +WG YA LLD GLWR+
Sbjct: 163 MDTAEDLYTQRFISYPRTETDGFSMNTKELRSIVSKQTKHEKWGSYASDLLDSNKGLWRD 222
Query: 71 PRGGGHDDKAHPPIHPTKFS-AGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVEID 129
PR H D +HPPIHP KFS ESGW + LYEL+VRHFLAC+S+ A+ +TTVE+D
Sbjct: 223 PRACKHTDHSHPPIHPIKFSNRKESGWKDHQCVLYELIVRHFLACLSEDALVQKTTVEVD 282
Query: 130 IAGELFSACGRVILEKNYLDVYPFET--WGGSLIPTYTVGQQFTPTALTLDSGVTRPPPL 187
+AG+ F A + + Y +Y +E+ G S P YT G + TP L + P
Sbjct: 283 LAGQQFFAMTMTLYKLGYRKMYHYESLFLGFSKFPPYTAGGELTPMDLIVKGSTYSSPQN 342
Query: 188 LSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATK--DAST-RFTPTNLGEALVMGYDD 244
LS+ DLLS M +E IGTD+T H I ++ R Y + D +T R+ PT LG AL GYD
Sbjct: 343 LSDEDLLSRMQQERIGTDSTWHLLINTVIGRKYVERKFDGNTWRYEPTKLGLALFNGYD- 401
Query: 245 IEMAYKLWKPELRSAMESDMKSVSEGTKGKDAVL 278
+M LWKPE+R+ ME + + GT K L
Sbjct: 402 -QMKLPLWKPEMRAKMEKQITMIKNGTATKKDCL 434
>Medtr5g061930.1 | DNA topoisomerase | HC | chr5:25738278-25735295 |
20130731
Length = 438
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 163/274 (59%), Gaps = 9/274 (3%)
Query: 12 LKVAEELYQTGFISYPRTETDSFSPRTN-LHAIVQEQQGHPEWGIYAQRLLDPEAGLWRN 70
+ AE+LY FISYPRTETD FS T L +IV +Q H +WG YA LLD GLWR+
Sbjct: 163 MDTAEDLYTQRFISYPRTETDGFSMNTKELRSIVSKQTKHEKWGSYASDLLDSNKGLWRD 222
Query: 71 PRGGGHDDKAHPPIHPTKFS-AGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVEID 129
PR H D +HPPIHP KFS ESGW + LYEL+VRHFLAC+S+ A+ +TTVE+D
Sbjct: 223 PRACKHTDHSHPPIHPIKFSNRKESGWKDHQCVLYELIVRHFLACLSEDALVQKTTVEVD 282
Query: 130 IAGELFSACGRVILEKNYLDVYPFET--WGGSLIPTYTVGQQFTPTALTLDSGVTRPPPL 187
+AG+ F A + + Y +Y +E+ G S P YT G + TP L + P
Sbjct: 283 LAGQQFFAMTMTLYKLGYRKMYHYESLFLGFSKFPPYTAGGELTPMDLIVKGSTYSSPQN 342
Query: 188 LSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATK--DAST-RFTPTNLGEALVMGYDD 244
LS+ DLLS M +E IGTD+T H I ++ R Y + D +T R+ PT LG AL GYD
Sbjct: 343 LSDEDLLSRMQQERIGTDSTWHLLINTVIGRKYVERKFDGNTWRYEPTKLGLALFNGYD- 401
Query: 245 IEMAYKLWKPELRSAMESDMKSVSEGTKGKDAVL 278
+M LWKPE+R+ ME + + GT K L
Sbjct: 402 -QMKLPLWKPEMRAKMEKQITMIKNGTATKKDCL 434
>Medtr3g084800.2 | DNA topoisomerase I | HC | chr3:38297420-38308924
| 20130731
Length = 800
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 15/320 (4%)
Query: 12 LKVAEELYQTGFISYPRTETDSFSPRTNLHAIVQEQQGHPEWGIYAQRLLDPEAGLWRNP 71
+++AE LY GFISYPRTE+ ++ P + + + Q+ +P WG Y + LL A ++ P
Sbjct: 252 MQLAERLYTQGFISYPRTESTAYPPSFDFRSALSAQRNNPTWGNYVEGLL---ASGYQKP 308
Query: 72 RGGGHDDKAHPPIHPTKFSAGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVEIDIA 131
R G D HPPI P K SA E + KLY+ + ++F+ VS VE +
Sbjct: 309 RSGT-DVGDHPPITPMK-SASEDMLGNDAWKLYQYICQYFIGTVSPDCKYIRKKVEFQVG 366
Query: 132 GELFSACGRVILEKNYLDVYPFETWGGSLIPTYTVGQQFTPTALTLDSGVTRPPPLLSEA 191
GE F G+ ++ K + + P+ +P++ GQ+ + + L G T PP L+E+
Sbjct: 367 GESFHCTGQHVITKGFTAIMPWLAINDKSLPSFEEGQKIKLSKVELYEGSTTPPDFLTES 426
Query: 192 DLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDIEMAYKL 251
+L+S M+K GIGTDA++ HI + +R Y A + +PT LG LV GY I+ L
Sbjct: 427 ELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLSPTTLGITLVRGYQSIDP--DL 484
Query: 252 WKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLEAMSIFFQRSN 311
P++RS +E + +++G V+ +++ K F + VK +EAM F+
Sbjct: 485 CLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFCYF----VKKIEAMDALFEAQF 540
Query: 312 RSAGDELHATGEVVRRCGLC 331
+ D +G ++ +CG C
Sbjct: 541 SALVD----SGRIMSKCGKC 556
>Medtr3g084800.1 | DNA topoisomerase I | HC | chr3:38297430-38308919
| 20130731
Length = 860
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 167/320 (52%), Gaps = 15/320 (4%)
Query: 12 LKVAEELYQTGFISYPRTETDSFSPRTNLHAIVQEQQGHPEWGIYAQRLLDPEAGLWRNP 71
+++AE LY GFISYPRTE+ ++ P + + + Q+ +P WG Y + LL A ++ P
Sbjct: 312 MQLAERLYTQGFISYPRTESTAYPPSFDFRSALSAQRNNPTWGNYVEGLL---ASGYQKP 368
Query: 72 RGGGHDDKAHPPIHPTKFSAGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVEIDIA 131
R G D HPPI P K SA E + KLY+ + ++F+ VS VE +
Sbjct: 369 RSGT-DVGDHPPITPMK-SASEDMLGNDAWKLYQYICQYFIGTVSPDCKYIRKKVEFQVG 426
Query: 132 GELFSACGRVILEKNYLDVYPFETWGGSLIPTYTVGQQFTPTALTLDSGVTRPPPLLSEA 191
GE F G+ ++ K + + P+ +P++ GQ+ + + L G T PP L+E+
Sbjct: 427 GESFHCTGQHVITKGFTAIMPWLAINDKSLPSFEEGQKIKLSKVELYEGSTTPPDFLTES 486
Query: 192 DLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDIEMAYKL 251
+L+S M+K GIGTDA++ HI + +R Y A + +PT LG LV GY I+ L
Sbjct: 487 ELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLSPTTLGITLVRGYQSIDP--DL 544
Query: 252 WKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLEAMSIFFQRSN 311
P++RS +E + +++G V+ +++ K F + VK +EAM F+
Sbjct: 545 CLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFCYF----VKKIEAMDALFEAQF 600
Query: 312 RSAGDELHATGEVVRRCGLC 331
+ D +G ++ +CG C
Sbjct: 601 SALVD----SGRIMSKCGKC 616
>Medtr1g009315.2 | DNA topoisomerase I, bacterial protein | HC |
chr1:1296395-1279071 | 20130731
Length = 1058
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 182 TRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMG 241
T+PPP SEA L++ +D+ GIG A+ ++ L DR Y T +R +V
Sbjct: 736 TQPPPRYSEASLVNKLDEIGIGRAASYAQTLQGLQDRNYVT--VKSRVISPEFRGRMVSA 793
Query: 242 YDDIEMAYKLWKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLE 301
+ + ++ + ME+++ +VS GT +++ + K C ++ +E
Sbjct: 794 FLSHHFS-EVTDYNFTADMETELDNVSAGTTNWKSLVRDYSTRFKTCCERTSNVHIRQVE 852
Query: 302 AM-------SIFFQRSNRSAGDELHATGEVVRRCGLCQESDMVLKKNRDGN-FMVGCLGF 353
M +F N+S R C C E ++ K +R G+ + +GC
Sbjct: 853 KMLEKKFEDYLFGSFPNKS------------RSCPSCTEGTLIFKVSRFGSGYFIGCDQH 900
Query: 354 PQCR 357
P+C+
Sbjct: 901 PRCK 904
>Medtr1g009315.1 | DNA topoisomerase I, bacterial protein | HC |
chr1:1296395-1275993 | 20130731
Length = 1066
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 182 TRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMG 241
T+PPP SEA L++ +D+ GIG A+ ++ L DR Y T +R +V
Sbjct: 736 TQPPPRYSEASLVNKLDEIGIGRAASYAQTLQGLQDRNYVT--VKSRVISPEFRGRMVSA 793
Query: 242 YDDIEMAYKLWKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLE 301
+ + ++ + ME+++ +VS GT +++ + K C ++ +E
Sbjct: 794 FLSHHFS-EVTDYNFTADMETELDNVSAGTTNWKSLVRDYSTRFKTCCERTSNVHIRQVE 852
Query: 302 AM-------SIFFQRSNRSAGDELHATGEVVRRCGLCQESDMVLKKNRDGN-FMVGCLGF 353
M +F N+S R C C E ++ K +R G+ + +GC
Sbjct: 853 KMLEKKFEDYLFGSFPNKS------------RSCPSCTEGTLIFKVSRFGSGYFIGCDQH 900
Query: 354 PQCR 357
P+C+
Sbjct: 901 PRCK 904