Miyakogusa Predicted Gene

Lj0g3v0069769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0069769.1 tr|A9RVH9|A9RVH9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,45.45,0.0000000000003,DAP3,Ribosomal protein S23/S29,
mitochondrial; seg,NULL; SUBFAMILY NOT NAMED,NULL; MITOCHONDRIAL
28S,CUFF.3365.1
         (192 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g031280.1 | 28S ribosomal protein S29 | HC | chr3:26989282...   252   1e-67

>Medtr3g031280.1 | 28S ribosomal protein S29 | HC |
           chr3:26989282-26993712 | 20130731
          Length = 443

 Score =  252 bits (644), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/148 (79%), Positives = 132/148 (89%)

Query: 44  DLLFDEQERLRRLAADEKDPSLDVGPDGRPLFTSATSISKLTGKDSCTYFKLTKEALNEV 103
           D+ FDEQERLR L ADEK+PSL+VGP+GR LFTS+TS+SKLT  D CTYF LTKE L+ V
Sbjct: 57  DIFFDEQERLRNLTADEKNPSLNVGPNGRRLFTSSTSLSKLTNNDICTYFNLTKEGLDAV 116

Query: 104 LPEGVPMGMVKEFQDSMRPALLVRQSFLDLRDNFRRIVDPPLWSPPGKGVKARKQVVLDG 163
           LPEG+P+GM KEF+DSMR AL+VRQSFLDLRDNF+R+VDP +WSP GKGVK RKQVVLDG
Sbjct: 117 LPEGLPIGMEKEFKDSMRTALMVRQSFLDLRDNFKRVVDPRMWSPHGKGVKVRKQVVLDG 176

Query: 164 PVSCGKSIALAMLVQWAREEGWLVFYVP 191
           PVSCGKSIALAMLVQWAREEGWLV YVP
Sbjct: 177 PVSCGKSIALAMLVQWAREEGWLVLYVP 204