Miyakogusa Predicted Gene

Lj0g3v0067919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067919.1 tr|A9SX66|A9SX66_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110121,63.16,3e-18,Riboflavin synthase
domain-like,Riboflavin synthase-like beta-barrel; no description,NULL;
seg,NULL,CUFF.3230.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g030200.1 | ferredoxin reductase-like NAD(P) binding domai...   136   8e-33
Medtr5g022300.1 | leaf ferredoxin-NADP reductase | HC | chr5:878...    49   2e-06
Medtr5g022300.2 | leaf ferredoxin-NADP reductase | HC | chr5:878...    49   2e-06

>Medtr2g030200.1 | ferredoxin reductase-like NAD(P) binding domain
           protein | HC | chr2:11325642-11329365 | 20130731
          Length = 378

 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 72/80 (90%), Gaps = 1/80 (1%)

Query: 1   MSVPVQQASVPKVIVSPLELEAASEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIV 59
           + + VQQASVPKV VSPLELE  +EPPLNLHKPK+PYT TIVSVER+VGPKAPGETCH+V
Sbjct: 60  ICMSVQQASVPKVAVSPLELENPAEPPLNLHKPKEPYTATIVSVERLVGPKAPGETCHVV 119

Query: 60  IDHGGNVPYWEGQSYGFIPP 79
           I+H GNVPYWEGQSYG IPP
Sbjct: 120 INHDGNVPYWEGQSYGVIPP 139


>Medtr5g022300.1 | leaf ferredoxin-NADP reductase | HC |
           chr5:8789171-8793126 | 20130731
          Length = 361

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 7   QASVPKVIVSPLELEAASEPP-----LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVI 60
           +A V     +P+++E  S+       +N  KPK PY     +  +I G  APGET H+V 
Sbjct: 50  RAEVATEAPAPVKVEKISKKQEEGIVVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVF 109

Query: 61  DHGGNVPYWEGQSYGFIPPVSD 82
              G VPY EGQS G +P   D
Sbjct: 110 STEGEVPYREGQSIGIVPDGID 131


>Medtr5g022300.2 | leaf ferredoxin-NADP reductase | HC |
           chr5:8789171-8791696 | 20130731
          Length = 253

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 7   QASVPKVIVSPLELEAASEPP-----LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVI 60
           +A V     +P+++E  S+       +N  KPK PY     +  +I G  APGET H+V 
Sbjct: 50  RAEVATEAPAPVKVEKISKKQEEGIVVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVF 109

Query: 61  DHGGNVPYWEGQSYGFIP 78
              G VPY EGQS G +P
Sbjct: 110 STEGEVPYREGQSIGIVP 127