Miyakogusa Predicted Gene

Lj0g3v0067909.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067909.2 tr|A9SX66|A9SX66_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110121,56.98,2e-18,no description,NULL; seg,NULL;
Riboflavin synthase domain-like,Riboflavin synthase-like
beta-barrel,CUFF.3229.2
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g030200.1 | ferredoxin reductase-like NAD(P) binding domai...   199   2e-51
Medtr5g022300.1 | leaf ferredoxin-NADP reductase | HC | chr5:878...    50   2e-06
Medtr5g022300.2 | leaf ferredoxin-NADP reductase | HC | chr5:878...    49   4e-06

>Medtr2g030200.1 | ferredoxin reductase-like NAD(P) binding domain
           protein | HC | chr2:11325642-11329365 | 20130731
          Length = 378

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 111/134 (82%), Gaps = 4/134 (2%)

Query: 30  KMAVTAPVGSDLSIRRSGFKASNFNFWDNSWAPVFTLDLKA-NSSCVRSRQVICMSVPVQ 88
           +MAVT PV +D S RRS FKASN NF D SWAPVF LD+KA N    R++ VICMSV  Q
Sbjct: 8   QMAVTVPVSNDFSARRSVFKASNINFRDKSWAPVFALDMKAKNCGWRRNQNVICMSV--Q 65

Query: 89  QASVPKVIVSPLELEAASEPPLNLHKPKQPYT-TIVSVERIVGPKAPGETCHIVIDHGGN 147
           QASVPKV VSPLELE  +EPPLNLHKPK+PYT TIVSVER+VGPKAPGETCH+VI+H GN
Sbjct: 66  QASVPKVAVSPLELENPAEPPLNLHKPKEPYTATIVSVERLVGPKAPGETCHVVINHDGN 125

Query: 148 VPYWEGQSYGFIPP 161
           VPYWEGQSYG IPP
Sbjct: 126 VPYWEGQSYGVIPP 139


>Medtr5g022300.1 | leaf ferredoxin-NADP reductase | HC |
           chr5:8789171-8793126 | 20130731
          Length = 361

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 89  QASVPKVIVSPLELEAASEPP-----LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVI 142
           +A V     +P+++E  S+       +N  KPK PY     +  +I G  APGET H+V 
Sbjct: 50  RAEVATEAPAPVKVEKISKKQEEGIVVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVF 109

Query: 143 DHGGNVPYWEGQSYGFIP 160
              G VPY EGQS G +P
Sbjct: 110 STEGEVPYREGQSIGIVP 127


>Medtr5g022300.2 | leaf ferredoxin-NADP reductase | HC |
           chr5:8789171-8791696 | 20130731
          Length = 253

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 89  QASVPKVIVSPLELEAASEPP-----LNLHKPKQPYTTIVSVE-RIVGPKAPGETCHIVI 142
           +A V     +P+++E  S+       +N  KPK PY     +  +I G  APGET H+V 
Sbjct: 50  RAEVATEAPAPVKVEKISKKQEEGIVVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVF 109

Query: 143 DHGGNVPYWEGQSYGFIP 160
              G VPY EGQS G +P
Sbjct: 110 STEGEVPYREGQSIGIVP 127