Miyakogusa Predicted Gene

Lj0g3v0067359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067359.1 Non Characterized Hit- tr|I1KG47|I1KG47_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.44670
PE,79.73,0,seg,NULL; 2-Hacid_dh,D-isomer specific 2-hydroxyacid
dehydrogenase, catalytic domain; 2-Hacid_dh_C,D,CUFF.3202.1
         (306 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g005880.1 | D-3-phosphoglycerate dehydrogenase family prot...   377   e-105
Medtr1g107480.1 | D-3-phosphoglycerate dehydrogenase family prot...   345   2e-95
Medtr1g112510.1 | D-glycerate dehydrogenase/hydroxypyruvate redu...    70   2e-12
Medtr4g013090.1 | D-glycerate dehydrogenase/hydroxypyruvate redu...    59   5e-09
Medtr4g013100.1 | D-glycerate dehydrogenase/hydroxypyruvate redu...    58   1e-08
Medtr3g005970.1 | D-isomer specific 2-hydroxyacid dehydrogenase ...    55   8e-08
Medtr2g101840.1 | D-glycerate dehydrogenase/hydroxypyruvate redu...    55   1e-07
Medtr4g012960.1 | D-glycerate dehydrogenase/hydroxypyruvate redu...    54   3e-07
Medtr6g007170.1 | D-glycerate dehydrogenase/hydroxypyruvate redu...    50   2e-06

>Medtr4g005880.1 | D-3-phosphoglycerate dehydrogenase family protein
           | HC | chr4:408911-412319 | 20130731
          Length = 630

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/239 (77%), Positives = 201/239 (84%), Gaps = 3/239 (1%)

Query: 59  VVNAVLKTVXXXXXXXXXXXXXXXXXXXXKPTILVSEKLGDAGIQVLREFGHVECSYDLS 118
           +VN+VLKTV                    KPTILVSEKLG+AG+QVLR+ G+VEC+YDLS
Sbjct: 62  MVNSVLKTVDQTKQTNNVVSVNDENE---KPTILVSEKLGEAGLQVLRQLGNVECAYDLS 118

Query: 119 PEELCKKISSCDALIVRSGTKVTREVFEASKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 178
           PE+LCKKISSCDALIVRSGTKVTR+VFEA KG+LKVVGRAGVGIDNVDLQAATEFGCLVV
Sbjct: 119 PEDLCKKISSCDALIVRSGTKVTRKVFEAGKGKLKVVGRAGVGIDNVDLQAATEFGCLVV 178

Query: 179 NAPTANTXXXXXXXXXXXXXXXRNVAQADAALKAGKWLRSKYVGVSMVGKTLAVMGFGKV 238
           NAPTANT               RNV+QADA+LKAGKWLRSKYVGVSMVGKTLA+MGFGKV
Sbjct: 179 NAPTANTIAAAEHGIALLAAMARNVSQADASLKAGKWLRSKYVGVSMVGKTLAIMGFGKV 238

Query: 239 GSEVARRAKGLGMNVIAHDPYAPADRARAIGVELVSFDQAISTADFISLHMPLTPATNK 297
           GSEVARRAKGLGMNVIAHDPYAPADRARA+GVELVSFDQAI+TADFISLHMPLTP TNK
Sbjct: 239 GSEVARRAKGLGMNVIAHDPYAPADRARAVGVELVSFDQAITTADFISLHMPLTPTTNK 297


>Medtr1g107480.1 | D-3-phosphoglycerate dehydrogenase family protein
           | HC | chr1:48784015-48787525 | 20130731
          Length = 597

 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 165/210 (78%), Positives = 185/210 (88%)

Query: 88  KPTILVSEKLGDAGIQVLREFGHVECSYDLSPEELCKKISSCDALIVRSGTKVTREVFEA 147
           KPT+LV+EKLG+AG+ +L++F +V+CSY+L+PEELC KIS CDALIVRSGTKV+REVFE+
Sbjct: 55  KPTVLVAEKLGEAGLTLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSREVFES 114

Query: 148 SKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQAD 207
           S GRLKVVGRAGVGIDNVDL AATE GCLVVNAPTANT               RNVAQAD
Sbjct: 115 SGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAGMARNVAQAD 174

Query: 208 AALKAGKWLRSKYVGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARA 267
           A++KAGKW RSKYVGVS+VGKTLAVMGFGKVG+EVARRAKGLGM VIAHDPYAPADRA A
Sbjct: 175 ASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMKVIAHDPYAPADRAHA 234

Query: 268 IGVELVSFDQAISTADFISLHMPLTPATNK 297
           IGVELVSF++AI+TADFISLHMPLTPATNK
Sbjct: 235 IGVELVSFEEAIATADFISLHMPLTPATNK 264


>Medtr1g112510.1 | D-glycerate dehydrogenase/hydroxypyruvate
           reductase | HC | chr1:50932010-50928261 | 20130731
          Length = 386

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 91/213 (42%), Gaps = 26/213 (12%)

Query: 117 LSPEELCKKI-SSCDALIVRSGTKVTREVFEA-SKGRLKVVGRAGVGIDNVDLQAATEFG 174
           LS E++   I   CD +I +       E+F A SK   K      VG +NVD+ AA + G
Sbjct: 50  LSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKHG 109

Query: 175 CLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAALKAG---KWLRSKYVGVSMVGKTLA 231
             V N P   T               R + +AD  ++AG    WL   +VG  + G+T+ 
Sbjct: 110 VAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVG 169

Query: 232 VMGFGKVGSEVAR-RAKGLGMNVIAHDPYAPADRAR---AIGVEL-------------VS 274
           V+G G++GS  AR   +G  MN+I  D Y      +   A G  L              S
Sbjct: 170 VIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAAS 229

Query: 275 FDQAISTADFISLHMPLTPAT----NKSSMMRL 303
            D+ +  AD ISLH  L   T    NK  + ++
Sbjct: 230 MDEVLQEADIISLHPILDKTTYHLVNKERLAKM 262


>Medtr4g013090.1 | D-glycerate dehydrogenase/hydroxypyruvate
           reductase | HC | chr4:3521833-3518948 | 20130731
          Length = 313

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 1/107 (0%)

Query: 151 RLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAAL 210
            L++V    VG+D +DL    E G  V N P   T               R + + D  +
Sbjct: 67  NLEIVSSFSVGVDKIDLNKCKEKGICVTNTPDVLTDDVADLAIGLMLTLLRRICECDRFV 126

Query: 211 KAGKWLRSKY-VGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 256
           ++G W    Y +     GKT+ ++G G++G+ +A+RA+G   ++  +
Sbjct: 127 RSGDWKHGDYKLTTKFSGKTVGIIGLGRIGTAIAKRAEGFNCSICYY 173


>Medtr4g013100.1 | D-glycerate dehydrogenase/hydroxypyruvate
           reductase | HC | chr4:3525391-3522270 | 20130731
          Length = 314

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 151 RLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAAL 210
           +L++V    VG+D +DL    E G  V N P   T               R + + D  +
Sbjct: 68  KLEIVSSFSVGVDKIDLGKCKEKGIRVTNTPDVLTDEVADLAIGLMLTLLRRICECDRYV 127

Query: 211 KAGKWLRSKY-VGVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAIG 269
           + G W    Y +     GKT+ ++G G++G+ +A+RA+G    +     Y+   +  +  
Sbjct: 128 RGGNWKHGDYKLTTKFSGKTVGIIGLGRIGAAIAKRAEGFNCPI---SYYSRTQKQESKY 184

Query: 270 VELVSFDQAISTADFISLHMPLTPATNK 297
               S  +  S  D + +  PLT  T+ 
Sbjct: 185 KYYPSVVELASNCDILVVACPLTEETHH 212


>Medtr3g005970.1 | D-isomer specific 2-hydroxyacid dehydrogenase
           domain protein | HC | chr3:465612-473235 | 20130731
          Length = 382

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 16/154 (10%)

Query: 110 HVECSYDLSP-EELCKKISSCDALIVR----SGTKVTREVFEASKGRLKVVGRAGVGIDN 164
           H     D+ P EE+ K I++    +V+        ++R V      ++K++ + GVG++ 
Sbjct: 77  HSSIKVDVLPLEEIPKAIANYHVCVVKMMKLDSNIISRAV------QMKLIMQYGVGLEG 130

Query: 165 VDLQAATEFGCLVVNAP---TANTXXXXXXXXXXXXXXXRNVAQADAALKAGKWLRSKYV 221
           VD+ AAT+ G  V   P   T N+               R   +   +++  K    + +
Sbjct: 131 VDIDAATKHGIKVARIPSGGTGNSTACAEMAIYLMLGLLRKQNEMQISIQQRKL--GEPI 188

Query: 222 GVSMVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 255
           G ++ GKT+ ++GFG +G ++ARR K  G+ VIA
Sbjct: 189 GDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIA 222


>Medtr2g101840.1 | D-glycerate dehydrogenase/hydroxypyruvate
           reductase | HC | chr2:43814876-43817507 | 20130731
          Length = 314

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 151 RLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTXXXXXXXXXXXXXXXRNVAQADAAL 210
            L++V    VG D +DL+   E G  V N P   T               R +  +D  +
Sbjct: 67  NLEIVSTYSVGFDKIDLKKCREKGICVTNTPDVLTDDVADLAIALALAVFRKIPMSDGYV 126

Query: 211 KAGKWLRSKYVGVS-MVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 256
           K+  W  S Y   S   GK + ++G G++GS +A+RA   G  V  H
Sbjct: 127 KSELWKCSDYPLTSKFSGKAVGIVGLGRIGSAIAKRAAAFGCPVSYH 173


>Medtr4g012960.1 | D-glycerate dehydrogenase/hydroxypyruvate
           reductase | HC | chr4:3482543-3479185 | 20130731
          Length = 310

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 122 LCKKISSCDALIVRSGTKVTREVFEASKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAP 181
           L +  +S  A++ RS      E+ +A   +L+++  + VG+D +D++   E G  V   P
Sbjct: 39  LIQHGASIRAVVGRSTAGADSELIDALP-KLEIISSSSVGVDQIDVKKCKERGIRVTITP 97

Query: 182 TANTXXXXXXXXXXXXXXXRNVAQADAALKAGKWLRSKYVGVSMVGKTLAVMGFGKVGSE 241
              T               R +++ D  ++ G W     +     GKT+ ++G G++G+ 
Sbjct: 98  DVLTDEVADLAIGLILSLLRRISECDRFVRNGNW--KHQLTTKFSGKTVGIVGLGRIGTA 155

Query: 242 VARRAKGLGMNV 253
           +A+RA+G   ++
Sbjct: 156 IAKRAEGFNCSI 167


>Medtr6g007170.1 | D-glycerate dehydrogenase/hydroxypyruvate
           reductase | HC | chr6:1488273-1492303 | 20130731
          Length = 386

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 7/181 (3%)

Query: 121 ELCKKISSCDALIVR--SGTKVTREVFEASKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 178
           EL K I   + LI        VT E  + +K  L+++  AG+G D++DL AA   G  V 
Sbjct: 90  ELEKHIPDLNVLISTPFHPAYVTAERIKKAK-NLELLLTAGIGSDHIDLNAAAAAGLTVA 148

Query: 179 NAPTANTXXXXXXXXXXXXXXXRNVAQADAALKAGKWLRS--KYVGVSMVGKTLAVMGFG 236
               +NT               RN          G+W  +   +    + GKT+  +G G
Sbjct: 149 EVTGSNTVSVAEDELMRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTVGTVGAG 208

Query: 237 KVGSEVARRAKGLGMNVIAHDPYA-PADRARAIGVEL-VSFDQAISTADFISLHMPLTPA 294
           ++G  + +R K    N++ HD      +  + IG +     D  +   D I ++MPLT  
Sbjct: 209 RIGKLLLQRLKPFNCNLLYHDRLKMEPELEKEIGAQFEEDLDAMLPKCDIIVMNMPLTDK 268

Query: 295 T 295
           T
Sbjct: 269 T 269