Miyakogusa Predicted Gene

Lj0g3v0067139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0067139.1 tr|Q0QFS0|Q0QFS0_9EUKA DNA-directed RNA
polymerase (Fragment) OS=Paravahlkampfia sp. LA GN=mtRNAP
PE,45.98,3e-19,DNA/RNA polymerases,NULL; DNA-DIRECTED RNA POLYMERASE,
MITOCHONDRIAL,DNA-directed RNA polymerase, ph,CUFF.3170.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC ...   147   2e-36
Medtr7g017440.1 | leguminosin group485 secreted peptide | HC | c...   140   3e-34

>Medtr8g065900.1 | DNA-directed RNA polymerase-like protein | HC |
           chr8:27401434-27394114 | 20130731
          Length = 727

 Score =  147 bits (372), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/87 (72%), Positives = 73/87 (83%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC  AG+ FAGVHDS+WTHACDVE MNRILRE FVELY+ PILENLLE+F+  +
Sbjct: 641 MMMTAVACKQAGMNFAGVHDSYWTHACDVEEMNRILREKFVELYETPILENLLENFEKTF 700

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P L FP LP+ GD DL++VL SPYFFN
Sbjct: 701 PNLKFPPLPERGDLDLQEVLKSPYFFN 727


>Medtr7g017440.1 | leguminosin group485 secreted peptide | HC |
           chr7:5556630-5564677 | 20130731
          Length = 566

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 72/87 (82%)

Query: 1   MMMTALACSDAGLCFAGVHDSFWTHACDVEIMNRILRENFVELYDMPILENLLEDFQTMY 60
           MMMTA+AC  AGL FAGVHDS+WTHACDV+ MNRILRE FVELY+ PILENLLE FQ  +
Sbjct: 480 MMMTAIACKKAGLSFAGVHDSYWTHACDVDNMNRILREKFVELYETPILENLLESFQESF 539

Query: 61  PGLAFPSLPKTGDFDLRKVLDSPYFFN 87
           P L FP LP+ G+ DL +VL+SPYFFN
Sbjct: 540 PSLEFPPLPERGNLDLNEVLESPYFFN 566