Miyakogusa Predicted Gene

Lj0g3v0066829.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066829.2 tr|I0YVG9|I0YVG9_9CHLO RNB-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,32.32,0.00000000000003,RIBONUCLEASE II,NULL; RIBONUCLEASE,NULL;
coiled-coil,NULL; seg,NULL,CUFF.3144.2
         (363 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g021750.1 | ribonuclease II | HC | chr4:7207202-7191578 | ...   530   e-151
Medtr4g021750.3 | ribonuclease II | HC | chr4:7207197-7191693 | ...   321   6e-88
Medtr4g021750.2 | ribonuclease II | HC | chr4:7203751-7191578 | ...   196   2e-50

>Medtr4g021750.1 | ribonuclease II | HC | chr4:7207202-7191578 |
           20130731
          Length = 787

 Score =  530 bits (1366), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/363 (73%), Positives = 297/363 (81%), Gaps = 1/363 (0%)

Query: 1   MAVRAVNTCCFFRPHSPPLSTAVRFFSRYRRPHPLFFXXXXXXXGYGARIQRRSIQSLFD 60
           MAVRAVNT    RP SP LST  RFFS +  P P           +    Q RSI+SLF+
Sbjct: 1   MAVRAVNTYSLLRPSSPSLSTVPRFFSPHH-PLPSALRFHPPSSSHVCHTQTRSIKSLFE 59

Query: 61  SVIEELQAMXXXXXXXXSAAAPSSNTGLFNGELLEDRLLNRSLQKGLLLEFKKDSERILL 120
           +V+EELQA         S  A SSNT L N E +EDRL+ RSLQKGLLLEFKKDS++ILL
Sbjct: 60  TVMEELQAKRKLRKKIVSVNASSSNTELLNEEHVEDRLVKRSLQKGLLLEFKKDSDKILL 119

Query: 121 AVAQRPDGKKNWMVSDQNGVSSSIKPQQVTFIVPGIDNFDRADIADFVQKAQDNMDPSLL 180
           AVAQRPDGKKNWMVSDQNGV+SSIKPQQVT+IVPGI NFD+ADI  FVQKAQ NMDPSLL
Sbjct: 120 AVAQRPDGKKNWMVSDQNGVTSSIKPQQVTYIVPGISNFDQADITHFVQKAQYNMDPSLL 179

Query: 181 EFAWIELLEKNKSVTVEELAEIIFGSAEPLESYSAHLLLSKDEVYFSVLETKGFRSIYGP 240
           EFAW EL EKNKSVTVEE+AEIIFG  EPLESYSAHLLLSKDE+YF++LE+KG R +YGP
Sbjct: 180 EFAWFELHEKNKSVTVEEMAEIIFGRVEPLESYSAHLLLSKDEIYFTILESKGLRCVYGP 239

Query: 241 RPSEQVEELIRRKIAKEAAENEFQEFIKLLASAKSMPRQDKPSKSSWVNEEKNWSRIESL 300
           RPSEQVEELIRRK+AKEAAE EFQ FIKLL SAKSMP  DKPSKSSW ++EK WSRIESL
Sbjct: 240 RPSEQVEELIRRKVAKEAAEKEFQNFIKLLGSAKSMPSHDKPSKSSWQDDEKIWSRIESL 299

Query: 301 QAYALDSCKNDEQRKTAGAILKEMGLAKTASSAVNLLVDIGYFPVHVNLELLKLGIPTDH 360
           +AYA+D+C +D+QR+TAG ILKEMGLAKT+SSAVNLL+DIGYFPVHVNL+LLKL IPTDH
Sbjct: 300 EAYAIDACISDKQRETAGIILKEMGLAKTSSSAVNLLIDIGYFPVHVNLDLLKLRIPTDH 359

Query: 361 SEE 363
            E+
Sbjct: 360 LEK 362


>Medtr4g021750.3 | ribonuclease II | HC | chr4:7207197-7191693 |
           20130731
          Length = 614

 Score =  321 bits (823), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 153/189 (80%), Positives = 172/189 (91%)

Query: 175 MDPSLLEFAWIELLEKNKSVTVEELAEIIFGSAEPLESYSAHLLLSKDEVYFSVLETKGF 234
           MDPSLLEFAW EL EKNKSVTVEE+AEIIFG  EPLESYSAHLLLSKDE+YF++LE+KG 
Sbjct: 1   MDPSLLEFAWFELHEKNKSVTVEEMAEIIFGRVEPLESYSAHLLLSKDEIYFTILESKGL 60

Query: 235 RSIYGPRPSEQVEELIRRKIAKEAAENEFQEFIKLLASAKSMPRQDKPSKSSWVNEEKNW 294
           R +YGPRPSEQVEELIRRK+AKEAAE EFQ FIKLL SAKSMP  DKPSKSSW ++EK W
Sbjct: 61  RCVYGPRPSEQVEELIRRKVAKEAAEKEFQNFIKLLGSAKSMPSHDKPSKSSWQDDEKIW 120

Query: 295 SRIESLQAYALDSCKNDEQRKTAGAILKEMGLAKTASSAVNLLVDIGYFPVHVNLELLKL 354
           SRIESL+AYA+D+C +D+QR+TAG ILKEMGLAKT+SSAVNLL+DIGYFPVHVNL+LLKL
Sbjct: 121 SRIESLEAYAIDACISDKQRETAGIILKEMGLAKTSSSAVNLLIDIGYFPVHVNLDLLKL 180

Query: 355 GIPTDHSEE 363
            IPTDH E+
Sbjct: 181 RIPTDHLEK 189


>Medtr4g021750.2 | ribonuclease II | HC | chr4:7203751-7191578 |
           20130731
          Length = 555

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/119 (78%), Positives = 108/119 (90%)

Query: 245 QVEELIRRKIAKEAAENEFQEFIKLLASAKSMPRQDKPSKSSWVNEEKNWSRIESLQAYA 304
           +VEELIRRK+AKEAAE EFQ FIKLL SAKSMP  DKPSKSSW ++EK WSRIESL+AYA
Sbjct: 12  KVEELIRRKVAKEAAEKEFQNFIKLLGSAKSMPSHDKPSKSSWQDDEKIWSRIESLEAYA 71

Query: 305 LDSCKNDEQRKTAGAILKEMGLAKTASSAVNLLVDIGYFPVHVNLELLKLGIPTDHSEE 363
           +D+C +D+QR+TAG ILKEMGLAKT+SSAVNLL+DIGYFPVHVNL+LLKL IPTDH E+
Sbjct: 72  IDACISDKQRETAGIILKEMGLAKTSSSAVNLLIDIGYFPVHVNLDLLKLRIPTDHLEK 130