Miyakogusa Predicted Gene

Lj0g3v0066379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066379.1 Non Characterized Hit- tr|K4C9C3|K4C9C3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,35.29,8e-16,LEA_2,Late embryogenesis abundant protein,
LEA-14,CUFF.3110.1
         (120 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g087000.1 | late embryogenesis abundant protein | HC | chr...   181   1e-46
Medtr1g112350.1 | glycyl-tRNA synthetase, putative | LC | chr1:5...   115   8e-27
Medtr2g011350.1 | late embryogenesis abundant protein | HC | chr...    47   4e-06

>Medtr2g087000.1 | late embryogenesis abundant protein | HC |
           chr2:36588904-36587743 | 20130731
          Length = 232

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 99/120 (82%)

Query: 1   MSVTYNGLRSSLFYRSDYITENNLAPFKQDTKSQTTLNATFSAAGAYIGTRAVDSINADR 60
           +SV YN LRSS+FY S+YI E+NLAPFK DTKS+  LNATFSA  AY+ +R VD++N DR
Sbjct: 113 LSVNYNALRSSIFYHSNYIAESNLAPFKMDTKSEANLNATFSAVNAYLDSRVVDALNGDR 172

Query: 61  SGGSVPLDVQILASASFRSGKWRFRTRWLKVLCRKLPVSIKSNSTSGDLIGGSRECQVWT 120
           S GSVP DVQI+A +SFRSG WRFRTR LKVLCRK+ + I SNSTSG+LIGG R+CQVWT
Sbjct: 173 SKGSVPFDVQIVAESSFRSGSWRFRTRILKVLCRKIDLGISSNSTSGELIGGYRDCQVWT 232


>Medtr1g112350.1 | glycyl-tRNA synthetase, putative | LC |
           chr1:50861047-50863234 | 20130731
          Length = 256

 Score =  115 bits (288), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 30  DTKSQTTLNATFSAAGAYIGTRAVDSINADRSGGSVPLDVQILASASFRSGKWRFRTRWL 89
           DTK ++ LNA FS    Y+ +R V++IN DRS GSVP D QI+A +SFRS  WRFRTR L
Sbjct: 2   DTKLESNLNAIFSTVNMYLESRVVNAINGDRSKGSVPSDAQIVAESSFRSISWRFRTRIL 61

Query: 90  KVLCRKLPVSIKSNSTSGDLIGGSRECQVW 119
           K LC+K+ V I SNST+G+LIGG+RECQ +
Sbjct: 62  KALCKKIDVGISSNSTTGELIGGNRECQPY 91


>Medtr2g011350.1 | late embryogenesis abundant protein | HC |
           chr2:2751617-2750551 | 20130731
          Length = 202

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%)

Query: 1   MSVTYNGLRSSLFYRSDYITENNLAPFKQDTKSQTTLNATFSAAGAYIGTRAVDSINADR 60
           +S+ Y+ +  S+ Y    +  N + PF Q  K+ T ++A  +A    +       +  +R
Sbjct: 88  VSLYYDSIEVSVRYEDQTLATNAVQPFFQPHKNVTRMHARLTAQTVALYDSVPKDLKLER 147

Query: 61  SGGSVPLDVQILASASFRSGKWRFRTRWLKVLC 93
           S G + LDV I A   F+ G  + R R L++ C
Sbjct: 148 SSGDIALDVFIRARIRFKVGLLKTRHRTLRISC 180