Miyakogusa Predicted Gene

Lj0g3v0066299.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0066299.2 tr|A9RHM9|A9RHM9_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,48.39,4e-17,unchar_dom_1: uncharacterized domain
1,Phenylacetic acid degradation-related domain; no
description,,CUFF.3109.2
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g045050.1 | acyl-CoA thioesterase | HC | chr2:19598605-196...   180   2e-46
Medtr2g045080.1 | acyl-CoA thioesterase | HC | chr2:19613290-196...   164   2e-41

>Medtr2g045050.1 | acyl-CoA thioesterase | HC |
           chr2:19598605-19601235 | 20130731
          Length = 161

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 96/109 (88%)

Query: 21  PLHAIGFEIEELSPQRVTGRLPITLKCCQPFKVLHGGVSAMIAESLASMGAHMASGYQRV 80
           PLH IGFE E+LS Q+V+G L +T KCCQPFKVLHGGVSAMI+ESLAS+GAH+A GY+RV
Sbjct: 19  PLHTIGFEFEDLSAQKVSGNLHLTQKCCQPFKVLHGGVSAMISESLASIGAHIACGYKRV 78

Query: 81  AGIQLSINHLKRAELGDLVHAEATPLNVGKTVQVWEVTIWKIDPSNLQN 129
           AGIQLSINHLK A +GD +HAEATPL VGK++QVW+V +WKIDPSN QN
Sbjct: 79  AGIQLSINHLKAAVIGDFIHAEATPLIVGKSIQVWDVRLWKIDPSNSQN 127


>Medtr2g045080.1 | acyl-CoA thioesterase | HC |
           chr2:19613290-19614868 | 20130731
          Length = 171

 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 94/119 (78%), Gaps = 10/119 (8%)

Query: 21  PLHAIGFEIEELSPQRVTGRLPITLKCCQPFKVLHGGVSAMIAESLASMGAHMASGYQRV 80
           PLH  GFE +++S  +V+G L +T KCCQPF VLHGGVSA+IAE+LAS+GAH+A GY+RV
Sbjct: 19  PLHTFGFEFKDVSSDKVSGHLQVTEKCCQPFSVLHGGVSAVIAEALASIGAHVACGYKRV 78

Query: 81  AGIQLSINHLKRAELGDLVHAEATPLNVGKTVQ----------VWEVTIWKIDPSNLQN 129
           AGIQLSINHLK A LGDL++AEATPL+V KT+Q          VW+V IWKI+PSN QN
Sbjct: 79  AGIQLSINHLKSAMLGDLIYAEATPLSVAKTIQESAPLYILLKVWDVKIWKIEPSNSQN 137