Miyakogusa Predicted Gene

Lj0g3v0065939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065939.1 Non Characterized Hit- tr|I3S7K3|I3S7K3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RIBOSOMAL_L15,Ribosomal protein L15, conserved site; 60S
RIBOSOMAL PROTEIN L27A,NULL; no description,CUFF.3083.1
         (148 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g069460.1 | 60S ribosomal protein L27a-3 | HC | chr8:29101...   239   7e-64
Medtr5g033090.1 | 60S ribosomal protein L27a-3 | HC | chr5:14260...   225   9e-60
Medtr3g077050.1 | 60S ribosomal protein L27a-3 | HC | chr3:34601...   224   2e-59
Medtr4g119380.1 | transmembrane protein, putative | LC | chr4:49...    68   3e-12

>Medtr8g069460.1 | 60S ribosomal protein L27a-3 | HC |
           chr8:29101416-29102234 | 20130731
          Length = 150

 Score =  239 bits (610), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/148 (77%), Positives = 123/148 (83%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTSLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNQFHCPIVNVEKLWSLLPQEAKDKAAKSKGTAPVVDVTQYGFFKVLGKGVLPENQ 120
           FHKLRN+FH P VN++ LWSLLPQE KDKA+KSK  APV+DVTQ+GFFKVLGKGVLP+NQ
Sbjct: 61  FHKLRNKFHSPTVNIDTLWSLLPQEVKDKASKSKDVAPVIDVTQFGFFKVLGKGVLPKNQ 120

Query: 121 PLVVXXXXXXXXXXXXXXXXGGAVLLTA 148
            +VV                GGAVLLTA
Sbjct: 121 SVVVKAKLVSKIAEKKIKEAGGAVLLTA 148


>Medtr5g033090.1 | 60S ribosomal protein L27a-3 | HC |
           chr5:14260828-14261709 | 20130731
          Length = 147

 Score =  225 bits (574), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 123/148 (83%), Gaps = 1/148 (0%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNQFHCPIVNVEKLWSLLPQEAKDKAAKSKGTAPVVDVTQYGFFKVLGKGVLPENQ 120
           FHKLRN+F+ PIVN++K+ SL+PQ+ K+KA K    APV+DVTQ+GFFK+LGKGVLP+NQ
Sbjct: 61  FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKE-NKAPVIDVTQFGFFKLLGKGVLPQNQ 119

Query: 121 PLVVXXXXXXXXXXXXXXXXGGAVLLTA 148
           P VV                GGAV+LTA
Sbjct: 120 PFVVKTKLISKIAEKKIKEAGGAVVLTA 147


>Medtr3g077050.1 | 60S ribosomal protein L27a-3 | HC |
           chr3:34601399-34602531 | 20130731
          Length = 147

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 123/148 (83%), Gaps = 1/148 (0%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNQFHCPIVNVEKLWSLLPQEAKDKAAKSKGTAPVVDVTQYGFFKVLGKGVLPENQ 120
           FHKLRN+F+ PIVN++K+ SL+PQ+ K+KA K    AP++DVTQ+GFFK+LGKGVLP+NQ
Sbjct: 61  FHKLRNKFYNPIVNIDKIASLIPQDVKEKALKE-NKAPMIDVTQFGFFKLLGKGVLPQNQ 119

Query: 121 PLVVXXXXXXXXXXXXXXXXGGAVLLTA 148
           P VV                GGAV+LTA
Sbjct: 120 PFVVKTKLISKIAEKKIKEAGGAVVLTA 147


>Medtr4g119380.1 | transmembrane protein, putative | LC |
           chr4:49424788-49425567 | 20130731
          Length = 210

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 57/124 (45%), Gaps = 55/124 (44%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           +TTRFKKNRKK  H               G RGN  GM+HHRILFDKYHPGY        
Sbjct: 100 LTTRFKKNRKKGDH---------------GNRGNDEGMNHHRILFDKYHPGY-------- 136

Query: 61  FHKLRNQFHCPIVNVEKLWSLLPQEAKDKAAKSKGTAPVVDVTQYGFFKVLGKGVLPENQ 120
                         ++K+ SL+P++ K+KA K +   PV+D                 NQ
Sbjct: 137 --------------IDKIASLIPKDVKEKALK-ENKGPVID-----------------NQ 164

Query: 121 PLVV 124
           P VV
Sbjct: 165 PFVV 168