Miyakogusa Predicted Gene

Lj0g3v0065789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065789.1 Non Characterized Hit- tr|I1NK96|I1NK96_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=3 SV=1,41.6,1e-18,INNER
MEMBRANE ALBINO3-LIKE PROTEIN 1, 2, CHLOROPLAST,NULL; OXA1,Membrane
insertase OXA1/ALB3/YidC; ,CUFF.3069.1
         (246 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086250.1 | 60 kDa inner membrane protein | HC | chr3:3902...   236   1e-62
Medtr4g063705.1 | 60 kDa inner membrane protein | HC | chr4:2358...    92   5e-19

>Medtr3g086250.1 | 60 kDa inner membrane protein | HC |
           chr3:39021780-39028042 | 20130731
          Length = 532

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/248 (55%), Positives = 169/248 (68%), Gaps = 9/248 (3%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVFLQKSGGA 60
           MQSSQA  PN K+SQ L   LPL+IGYFALSVPSGLSLYW TNNILST QQ++LQK GGA
Sbjct: 292 MQSSQATGPNAKSSQVLNKVLPLVIGYFALSVPSGLSLYWFTNNILSTLQQIWLQKLGGA 351

Query: 61  KNPVSPVQDDIMKD-NLTQIPKPLSKLSSTKVEDATQARQGEKSTSEGPQRGEKFRQIMX 119
           KNP+  V DD +K+ +L Q+ K +S L+STK+E+   AR+  K TSEGP+ G+KF+Q+M 
Sbjct: 352 KNPLRQVLDDNVKNVDLMQVQKSVSNLNSTKIEE---ARKDSKLTSEGPRPGDKFKQLME 408

Query: 120 XXXXXXXXXXXXXXXXXXXXXXX-THDKTIEGGNQTEGDLVVEKSQSVAADTDLPISGIV 178
                                    H++T+EGGNQ   DL V+ SQSVA DTD  ISG++
Sbjct: 409 QEAKKKQQREEEKRKAEEAAAKANNHEQTVEGGNQVVNDL-VKNSQSVADDTDPSISGVI 467

Query: 179 NGNQSSKDLEGNQNSTSTSETENDQVSAHSKVGINDKSLDQEPREVLTTTATTKKQPPRE 238
           NGN   KDLEGNQNSTSTS+T ND+ SAH    +N K+L++E REVL+T  TT KQ   E
Sbjct: 468 NGN--GKDLEGNQNSTSTSDTANDEGSAHLN-AVNKKNLEKESREVLSTRVTTNKQAHGE 524

Query: 239 DQDHVAKD 246
           D D V+KD
Sbjct: 525 DSDRVSKD 532


>Medtr4g063705.1 | 60 kDa inner membrane protein | HC |
           chr4:23583081-23577537 | 20130731
          Length = 444

 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 1   MQSSQANDPNMKTSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVFLQKSGGA 60
           M+  Q NDP  K +  +  FLPLMIGYF+LSVPSGL++YW TNN+LSTAQQ++L+K GGA
Sbjct: 279 MKPPQTNDPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQIWLRKLGGA 338

Query: 61  KNPV 64
           K  V
Sbjct: 339 KPAV 342