Miyakogusa Predicted Gene

Lj0g3v0065769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065769.1 tr|D8TT90|D8TT90_VOLCA Inner membrane
ALBINO3-like protein 2, chloroplast (Fragment) OS=Volvox
carte,57.75,3e-17,INNER MEMBRANE ALBINO3-LIKE PROTEIN 1, 2,
CHLOROPLAST,NULL; OXA1,Membrane insertase OXA1/ALB3/YidC; ,CUFF.3066.1
         (186 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g086250.1 | 60 kDa inner membrane protein | HC | chr3:3902...   263   1e-70
Medtr4g063705.1 | 60 kDa inner membrane protein | HC | chr4:2358...   132   1e-31

>Medtr3g086250.1 | 60 kDa inner membrane protein | HC |
           chr3:39021780-39028042 | 20130731
          Length = 532

 Score =  263 bits (671), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 149/187 (79%), Gaps = 9/187 (4%)

Query: 1   MAALLPCVPSLVSVPFGNNWSRTHLPHRPHSFS--GSTRHFLRGSLSVARFGLKPGFLPD 58
           M+ALLPC P+++S PFGN     HLP RPHS +  GST+ FLRGSLSV RFG  PGFLP+
Sbjct: 1   MSALLPCTPTILSAPFGNRSRTNHLPLRPHSHALPGSTKRFLRGSLSVTRFGFHPGFLPE 60

Query: 59  PDAAAAAEGVIRELFTRAEGFLYTVADAAVPSSDTAGXXXXXXXLHNQNNDWFSGIANYM 118
           P+ A   E V+RELF RAEGFLYT+ADAAV SSD A           QNNDWFSGI NYM
Sbjct: 61  PEDA---EFVLRELFNRAEGFLYTIADAAVSSSDIA----ITTTTAKQNNDWFSGITNYM 113

Query: 119 ETVLKILKDGLSSVHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRTLQPQIKAIQ 178
           E +LK+LKDGLS++HVPYAYGFAII+LT+LVK ATFPLT+KQVESAMAMR+LQPQ+KAIQ
Sbjct: 114 EIILKVLKDGLSTLHVPYAYGFAIIMLTILVKVATFPLTRKQVESAMAMRSLQPQVKAIQ 173

Query: 179 QRYAGDQ 185
           ++YA DQ
Sbjct: 174 KQYARDQ 180


>Medtr4g063705.1 | 60 kDa inner membrane protein | HC |
           chr4:23583081-23577537 | 20130731
          Length = 444

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 87/114 (76%), Gaps = 2/114 (1%)

Query: 72  LFTRAEGFLYTVADAAVPSSDTAGXXXXXXXLHNQNNDWFSGIANYMETVLKILKDGLSS 131
           +F RAEG LYT+ADAAV +               +N  WF  I++ ME VLKILKDGLS+
Sbjct: 56  VFARAEGLLYTLADAAVTADAVTSTSTDVTV--QKNGGWFGFISDGMEFVLKILKDGLSA 113

Query: 132 VHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRTLQPQIKAIQQRYAGDQ 185
           VHVPY+YGFAIILLT++VKAAT PLTK+QVES +AM+ LQP+IKAIQQRYAG+Q
Sbjct: 114 VHVPYSYGFAIILLTLIVKAATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQ 167