Miyakogusa Predicted Gene

Lj0g3v0065489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065489.1 Non Characterized Hit- tr|D7LRV0|D7LRV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,46.74,0.0000000005,seg,NULL,CUFF.3039.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g036115.1 | hypothetical protein | HC | chr8:13301078-1329...    86   1e-17

>Medtr8g036115.1 | hypothetical protein | HC |
           chr8:13301078-13298484 | 20130731
          Length = 637

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 62/116 (53%), Gaps = 19/116 (16%)

Query: 1   MNSSKREEDGD---LFLPVPPDVEADPPHQI--ET----------SFSLLEIVLFXXXXX 45
           MNSSKREE+ D   LFLPVPPD+   PPHQI   T          SFSL EIVLF     
Sbjct: 1   MNSSKREEEEDDLNLFLPVPPDLSIHPPHQILPSTTTTQPPSEPPSFSLSEIVLFPSPSP 60

Query: 46  XXXXXXXXXX----XXXXXIEKPLFISPDPHISSQFYTFNPDSYTLMIRCRDPRRL 97
                                KP FISPDPHISSQFYTFN DS++LMI C    RL
Sbjct: 61  SSSPHSHSSGDSPPQTTAPTLKPFFISPDPHISSQFYTFNRDSHSLMINCLLQNRL 116