Miyakogusa Predicted Gene

Lj0g3v0065059.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0065059.3 Non Characterized Hit- tr|I3SV15|I3SV15_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,99.12,0,UBIQUITIN
DOMAIN CONTAINING 1 PROTEIN-RELATED,NULL; seg,NULL,CUFF.3090.3
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g075840.1 | ubiquitin domain protein | HC | chr2:31732023-...   195   9e-51

>Medtr2g075840.1 | ubiquitin domain protein | HC |
           chr2:31732023-31728249 | 20130731
          Length = 114

 Score =  195 bits (495), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 97/113 (85%)

Query: 1   MGCAGSSQSKADGTEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRKEIWDXXX 60
           MGCAGSSQ+KADGT KKIRKPKPWKHPQPIT+TQLIQLRDEFWDTAPHYGGRKEIWD   
Sbjct: 1   MGCAGSSQAKADGTVKKIRKPKPWKHPQPITKTQLIQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  XXXXXXXXXXXXIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRD 113
                       IVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTN+I++
Sbjct: 61  AAAEADLSLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNMIQE 113