Miyakogusa Predicted Gene

Lj0g3v0064269.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0064269.1 Non Characterized Hit- tr|B9RIY4|B9RIY4_RICCO
Mads box protein, putative OS=Ricinus communis
GN=RCOM,55.14,2e-16,coiled-coil,NULL; seg,NULL; K_BOX,Transcription
factor, K-box; K-box,Transcription factor, K-box,CUFF.2950.1
         (122 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g038300.1 | MADS-box transcription factor | HC | chr1:1417...    86   7e-18

>Medtr1g038300.1 | MADS-box transcription factor | HC |
           chr1:14177669-14181324 | 20130731
          Length = 232

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 20/121 (16%)

Query: 1   MRGLKYEELVQLEHDLENSIAKVRNRQNELLQQQTDNLRRKERILEDQNSTLTNLIQEHR 60
           M+ L++++L ++EH+LE S+AKVRNRQNEL+QQQ +NL+RKERIL+D+N  L+N   EH+
Sbjct: 121 MKDLQFDDLSKIEHELEISLAKVRNRQNELMQQQMENLQRKERILQDENMNLSNW--EHK 178

Query: 61  AMWEFQKAAAVEAHKPVGVVMDQFSFFEXXXXXXXXXXXXXXXXXXXFHPYLQLALPNIQ 120
           A+ E +             VMDQF+FFE                    +PYLQL  P  Q
Sbjct: 179 AVMENK------------AVMDQFAFFE------DQPLSRILQLAAPVNPYLQLGQPVFQ 220

Query: 121 D 121
           D
Sbjct: 221 D 221