Miyakogusa Predicted Gene

Lj0g3v0064039.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0064039.1 Non Characterized Hit- tr|B9TBG0|B9TBG0_RICCO
Putative uncharacterized protein (Fragment)
OS=Ricinus,75,9e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.3015.1
         (457 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031910.1 | mediator of RNA polymerase II transcription su...   833   0.0  

>Medtr1g031910.1 | mediator of RNA polymerase II transcription
           subunit 23 | HC | chr1:11217223-11235651 | 20130731
          Length = 1615

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/456 (87%), Positives = 417/456 (91%)

Query: 1   MQAPTPASPLTSVHSIGSPAQPTIESLSYATLSPVKXXXXXXXXXXXKLRGSPSVRNNDI 60
            Q+  PASPLTSVH+IGSPAQ +IE LS A LSPVK           K RGSPSVRNNDI
Sbjct: 184 FQSSNPASPLTSVHTIGSPAQSSIEPLSCAALSPVKSSDISSAGQQSKQRGSPSVRNNDI 243

Query: 61  SNSSLRQLCCKIILTGLEVSLKPVTYAEIFHHMLNWLVNWDQRQQGVDETDILKSWRPDK 120
           S SSLRQLCCKIILTGLE SLKP+TYAEIF+HMLNWLVNWDQ QQGVDE+D  KSWRPD 
Sbjct: 244 SYSSLRQLCCKIILTGLEFSLKPMTYAEIFNHMLNWLVNWDQGQQGVDESDNQKSWRPDN 303

Query: 121 AVIAWLHSCLDVIWLLVDEGKCRVPFYELLRSDLQFIENIPDDEALFTLILEIHRRRDMM 180
           A++AWLHSCLDVIWLLVDEGKCRVPFYELLRSDLQF+ENIPDDEALFTLILEIHRRRDMM
Sbjct: 304 ALVAWLHSCLDVIWLLVDEGKCRVPFYELLRSDLQFMENIPDDEALFTLILEIHRRRDMM 363

Query: 181 AMHMQMLDQHLHCPTFGTHRILNQTTPNISGEAAAHLRLSPISYLSVLGEPLHAEDITNS 240
           AMHMQMLDQHLHCPTFGTHRILNQTTP ISGE  AHLRLSPISYLSVLGEPL+ EDI  S
Sbjct: 364 AMHMQMLDQHLHCPTFGTHRILNQTTPTISGEGIAHLRLSPISYLSVLGEPLNGEDIAIS 423

Query: 241 IQKGSLDWERAVRCIRHALRTTPSPDWWRRVLVLAPCYRPSSQAPTAGAVFSSEMICEAT 300
           IQKGSLDWERAVRCIRHALRTTPSPDWWRRVLVLA  YRPS+Q PTAGAVFS+EMICEAT
Sbjct: 424 IQKGSLDWERAVRCIRHALRTTPSPDWWRRVLVLASPYRPSAQGPTAGAVFSTEMICEAT 483

Query: 301 IDRIVELLKLTNSEINCWQDWLVFSDIFYFLVKSGCIDFVDFVDKLVSRLTEGDQHILKT 360
           IDRIVELLKLTNSEINCWQ+WLVFSDIFYFL+KSGCI+FVDFVDKLVSRL EGD H LKT
Sbjct: 484 IDRIVELLKLTNSEINCWQEWLVFSDIFYFLMKSGCINFVDFVDKLVSRLAEGDHHTLKT 543

Query: 361 NHVTWLLAQIIRIELVMNALNLDSRKVETTRKILSFHREDRSSDPNNPQSILLEFVSSCQ 420
           NHVTWLLAQIIRIELVM ALN DSRKVETTRK+LSFHREDRSSDPN+PQSILL+FVSSCQ
Sbjct: 544 NHVTWLLAQIIRIELVMTALNSDSRKVETTRKVLSFHREDRSSDPNSPQSILLDFVSSCQ 603

Query: 421 NLRIWSLNTTAREYLNSEQLQKGKQIDEWWRQASKG 456
           NLRIWSLNT+AREYLN+EQLQKGKQIDEWWRQASKG
Sbjct: 604 NLRIWSLNTSAREYLNNEQLQKGKQIDEWWRQASKG 639