Miyakogusa Predicted Gene

Lj0g3v0062389.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062389.1 tr|K1PRA0|K1PRA0_CRAGI Non-structural maintenance
of chromosomes element 1-like protein
OS=Crassostr,25.7,3e-18,seg,NULL; SMC_Nse1,Nse1 non-SMC component of
SMC5-6 complex; zf-RING-like,Zinc finger, RING-like;
SU,NODE_74836_length_1395_cov_22.472401.path1.1
         (344 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g078850.1 | Nse1 non-SMC component of SMC5-6 complex famil...   520   e-148
Medtr3g078850.2 | Nse1 non-SMC component of SMC5-6 complex famil...   520   e-148

>Medtr3g078850.1 | Nse1 non-SMC component of SMC5-6 complex family
           protein | HC | chr3:35602629-35597757 | 20130731
          Length = 354

 Score =  520 bits (1340), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/352 (71%), Positives = 289/352 (82%), Gaps = 11/352 (3%)

Query: 1   MSGGLNSRHHVVIQALLSRGPLKEKELHSMFEDITKRNPGADRKLFDAFILTINKALTCA 60
           MSGGL+  HHV+IQALLSRGPLKEK+LHSMFED+TK+NPG DR+LFDAFIL +NKALT A
Sbjct: 1   MSGGLSVPHHVIIQALLSRGPLKEKDLHSMFEDLTKKNPGTDRRLFDAFILAMNKALTFA 60

Query: 61  NFELRGCIDQYDGQVYYGVVNTVSDEQSKLGTKYTVPQIAFYKAVIEAIVQDATANGYIS 120
           NFELRGCIDQYDGQVYYG+VNTVSDEQSKLGTKYTVPQIAFYKA+IEAIVQDATA+G+IS
Sbjct: 61  NFELRGCIDQYDGQVYYGIVNTVSDEQSKLGTKYTVPQIAFYKAIIEAIVQDATADGFIS 120

Query: 121 SIGALNLNLDSQVTVATDPQSQGSQALVPPALKNFGLSQKEKALDELVRDRWLHLTTDGN 180
           SIGALNLNL+SQVT+ TD +SQGSQ  VP ALKNFGL+QK+  L EL RD WL +  DGN
Sbjct: 121 SIGALNLNLESQVTLVTDSESQGSQPHVPHALKNFGLTQKQNTLRELARDLWLDMPADGN 180

Query: 181 IKLGVKSFLDLRSWFLNNEVPSCHVCNEAGIKAELCQNESCTVRIHHYCLKQLFSQRKAA 240
           ++LGVKSFLDLRSWF +N+VPSCHVCNEAGIKAELC+NE+CTVRIHHYCLKQ+FSQ KAA
Sbjct: 181 VRLGVKSFLDLRSWFRSNDVPSCHVCNEAGIKAELCKNENCTVRIHHYCLKQIFSQIKAA 240

Query: 241 KVCPSCSTSWPYVVPKAEALHIEEDNEPPQESQRATSSXXXXXXANIVIEDEDVGSSNQD 300
           K CPSC TSWP+ VPKAEA+  E+D  P Q SQRAT S      AN ++ED+ VG SNQ 
Sbjct: 241 KACPSCGTSWPFAVPKAEAVETEDDTGPRQ-SQRATGSKGKRRRANTIVEDDGVGCSNQH 299

Query: 301 ELNGLT---------RKASRARRANVADTGGPSASQSSA-TSAFRRVTRRSS 342
           ELNG T         +  +R+R    ADT GP ASQSS+  S  RR+TR+ S
Sbjct: 300 ELNGPTESQHDNGRAQTRTRSRSTLEADTVGPDASQSSSGVSDLRRITRKYS 351


>Medtr3g078850.2 | Nse1 non-SMC component of SMC5-6 complex family
           protein | HC | chr3:35602629-35597757 | 20130731
          Length = 354

 Score =  520 bits (1340), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/352 (71%), Positives = 289/352 (82%), Gaps = 11/352 (3%)

Query: 1   MSGGLNSRHHVVIQALLSRGPLKEKELHSMFEDITKRNPGADRKLFDAFILTINKALTCA 60
           MSGGL+  HHV+IQALLSRGPLKEK+LHSMFED+TK+NPG DR+LFDAFIL +NKALT A
Sbjct: 1   MSGGLSVPHHVIIQALLSRGPLKEKDLHSMFEDLTKKNPGTDRRLFDAFILAMNKALTFA 60

Query: 61  NFELRGCIDQYDGQVYYGVVNTVSDEQSKLGTKYTVPQIAFYKAVIEAIVQDATANGYIS 120
           NFELRGCIDQYDGQVYYG+VNTVSDEQSKLGTKYTVPQIAFYKA+IEAIVQDATA+G+IS
Sbjct: 61  NFELRGCIDQYDGQVYYGIVNTVSDEQSKLGTKYTVPQIAFYKAIIEAIVQDATADGFIS 120

Query: 121 SIGALNLNLDSQVTVATDPQSQGSQALVPPALKNFGLSQKEKALDELVRDRWLHLTTDGN 180
           SIGALNLNL+SQVT+ TD +SQGSQ  VP ALKNFGL+QK+  L EL RD WL +  DGN
Sbjct: 121 SIGALNLNLESQVTLVTDSESQGSQPHVPHALKNFGLTQKQNTLRELARDLWLDMPADGN 180

Query: 181 IKLGVKSFLDLRSWFLNNEVPSCHVCNEAGIKAELCQNESCTVRIHHYCLKQLFSQRKAA 240
           ++LGVKSFLDLRSWF +N+VPSCHVCNEAGIKAELC+NE+CTVRIHHYCLKQ+FSQ KAA
Sbjct: 181 VRLGVKSFLDLRSWFRSNDVPSCHVCNEAGIKAELCKNENCTVRIHHYCLKQIFSQIKAA 240

Query: 241 KVCPSCSTSWPYVVPKAEALHIEEDNEPPQESQRATSSXXXXXXANIVIEDEDVGSSNQD 300
           K CPSC TSWP+ VPKAEA+  E+D  P Q SQRAT S      AN ++ED+ VG SNQ 
Sbjct: 241 KACPSCGTSWPFAVPKAEAVETEDDTGPRQ-SQRATGSKGKRRRANTIVEDDGVGCSNQH 299

Query: 301 ELNGLT---------RKASRARRANVADTGGPSASQSSA-TSAFRRVTRRSS 342
           ELNG T         +  +R+R    ADT GP ASQSS+  S  RR+TR+ S
Sbjct: 300 ELNGPTESQHDNGRAQTRTRSRSTLEADTVGPDASQSSSGVSDLRRITRKYS 351