Miyakogusa Predicted Gene

Lj0g3v0062379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062379.1 Non Characterized Hit- tr|Q9ABB1|Q9ABB1_CAUCR
Putative uncharacterized protein OS=Caulobacter
cresce,35.42,2e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,NODE_73907_length_1174_cov_46.174618.path1.1
         (228 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g087720.1 | plant/T10F18-100 protein | HC | chr5:38033138-...   345   3e-95

>Medtr5g087720.1 | plant/T10F18-100 protein | HC |
           chr5:38033138-38036827 | 20130731
          Length = 223

 Score =  345 bits (884), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 172/207 (83%), Positives = 184/207 (88%)

Query: 1   MDTLTAEDLPTIGGIATVSLLHSFIPTHWLPFSIVGRAQKWTLSRTLLVTALGAILHVIS 60
           M++ TAEDL TIGGIATVS+LHSFIPTHWLPFSIVGRAQKWTLSRTL VTA GAILHVIS
Sbjct: 1   MNSFTAEDLSTIGGIATVSILHSFIPTHWLPFSIVGRAQKWTLSRTLFVTAFGAILHVIS 60

Query: 61  TALLGITAVTMANTIVGEEAVHKLASLLLVFLGGSYVLLFLVGKGGHNHSHNQPMEKMAV 120
           T+LLGITA+TMANTI GEE VHKLASLLLVFLGG Y++LFL+GKGGH+HSHNQPMEKMAV
Sbjct: 61  TSLLGITAITMANTIAGEETVHKLASLLLVFLGGMYIILFLMGKGGHSHSHNQPMEKMAV 120

Query: 121 AGLILVPALSPCATTLPVFLAVGNSSTMMVLAIIVLLFSTITVMTSLVALSFYGASQLKF 180
           AGLILVPALSPCATTLPVFLAVGNSS+MMVLAIIVLL STI+VMTSLVALSFYGASQLKF
Sbjct: 121 AGLILVPALSPCATTLPVFLAVGNSSSMMVLAIIVLLLSTISVMTSLVALSFYGASQLKF 180

Query: 181 HWVERYDKXXXXXXXXXXXXXXXIFHD 207
           HWVERYDK               +FHD
Sbjct: 181 HWVERYDKLLVGSVLCLVGVLTLMFHD 207