Miyakogusa Predicted Gene

Lj0g3v0062309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062309.1 Non Characterized Hit- tr|E1ZLR1|E1ZLR1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,25.99,4e-17,FAMILY NOT NAMED,NULL; ATHOOK,AT hook-like; WD40
repeat-like,WD40-repeat-containing domain; DNA bind,CUFF.2802.1
         (1062 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060580.1 | transducin/WD40 repeat protein | HC | chr1:263...   896   0.0  

>Medtr1g060580.1 | transducin/WD40 repeat protein | HC |
            chr1:26357922-26370061 | 20130731
          Length = 968

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/774 (61%), Positives = 560/774 (72%), Gaps = 97/774 (12%)

Query: 348  LNISGQNEDTSHVTEKRKGRPKKDGGTNDKLSQIKRPKGRPKKSSTDLDKTNCETQYLPS 407
            LN    NE+ S++  K++ +PKKD  TNDK  +IKRP+GRP+K+ T              
Sbjct: 233  LNSREHNEEVSYLPGKKEKKPKKDTATNDKSIEIKRPRGRPRKNPT-------------- 278

Query: 408  LAVQFAENSTDFSALDGNLENSEEIFPTTNKRKRG-PKKH------DATN-------DKS 453
                               EN+EEI P TNKRKRG PKK+      D+TN         S
Sbjct: 279  -------------------ENNEEISPITNKRKRGRPKKNPTAIAVDSTNCGTKYIASGS 319

Query: 454  AP---------MKRPRGRSKR--------NSREVTISDLNCNDQFVPLAVQFPEDSAEFI 496
             P         + R   +SK+        NS++ T+SD NC +QFVPL VQ P DSAEFI
Sbjct: 320  VPNGNNENNEEILRITYKSKKRPKGRPKKNSKDGTVSDPNCENQFVPLTVQLP-DSAEFI 378

Query: 497  TPDVAHGNCNEHAAQQCSDTEQK------------------------HAKKVDFASNSET 532
            +PDV  G+ +EH +QQ S+T+ K                        +AKK   A +SET
Sbjct: 379  SPDVVPGSSDEHHSQQFSNTKGKNAKKAAANTKGKNAKKAAANTKGKNAKKAASAYDSET 438

Query: 533  FV-KSRLNIDHMEGRSNEDVSQPLLIQCGNATNHQMCCSSELEPPAATCSIP-DVTMPRV 590
             V +SRL+I+H E   + D S+PLLIQC N  NHQ   S  LEP A+TC IP +V +PRV
Sbjct: 439  LVARSRLDINHRERSCSPDTSRPLLIQCENEANHQPHGSPVLEPQASTCPIPQNVALPRV 498

Query: 591  VSCVAHNGKVAWDVKWRPLNNSDSLCKHRMGYLAVLLGNGSLEVWEVPLPHVLRAIYGQR 650
            VSC+AHNGKVAWDVKWRPL+N DS CKHRMGYLAVLLGNGSLEVWEVPLPH LRA+Y Q+
Sbjct: 499  VSCLAHNGKVAWDVKWRPLSNLDSSCKHRMGYLAVLLGNGSLEVWEVPLPHALRAVYTQK 558

Query: 651  EGTDPRFIKLDPVFKCSMLKRGGRQSIPLTMEWSVTPPHEYLLAGCHDGTVALWKFSTNS 710
            EGTDPRFIKL+PVFKCSMLKRG  QSIPLT+EWSVTPPH+YLLAGCHDGTVALWKFSTNS
Sbjct: 559  EGTDPRFIKLEPVFKCSMLKRGSLQSIPLTVEWSVTPPHDYLLAGCHDGTVALWKFSTNS 618

Query: 711  SSKCDDTKPVLCFGGDTVPIRTVAWAPFEGDPESSNIIATAGHEGLKFWDLRNPFRPLRN 770
            S+KCDDTKP+LCFGGDTVPIRTVAWAPFEGDPE+SN+I TAGHEGLKFWDLRNPFRPLR 
Sbjct: 619  STKCDDTKPILCFGGDTVPIRTVAWAPFEGDPETSNLIVTAGHEGLKFWDLRNPFRPLRL 678

Query: 771  LHPAPRIIYSLDWTSKPSSIIMSFDDGTMRTMSLMKAANELPVTGTTYNGKKQPWMHGST 830
            L P+ RIIYSLDW SKPS IIM F+DGTM+T+SL KAAN+LPVTGT Y GKKQPW+HG+T
Sbjct: 679  LQPSQRIIYSLDWQSKPSCIIMCFEDGTMKTISLAKAANDLPVTGTIYTGKKQPWLHGTT 738

Query: 831  FSTSAIWSVHVSPITGMAAYCCADGTAIRFQLTTKAVETDNSHNRIPYFLCGSQSEEEST 890
            +S+ AIWSV VSPITGM AYC ADG A+RFQLTTKAVETD+SHNR+P+FLCGS +EEEST
Sbjct: 739  YSSYAIWSVQVSPITGMVAYCGADGAAVRFQLTTKAVETDHSHNRLPFFLCGSVTEEEST 798

Query: 891  LIVNTPVPNTRFPLRKPQERARHAHSFREFLSKENLSKSVNNQMAKANDADSQTLALCDG 950
            +IVNTPV N+ FPL KP ER R++ SFR+ LSK   S+   NQM KA+  D   LALCDG
Sbjct: 799  IIVNTPVSNSPFPL-KPLERGRYSESFRDLLSK---SRIAYNQMIKASTNDCHILALCDG 854

Query: 951  DNLSLE--SDEALSSGEQHGREKLSSSRKKKAVESTAIVCTDDVSTSRRAVDDEKSDFGG 1008
            DN+ LE  S+EALSS EQ  R KLS SRKKK+ ESTA+VC D   T+   VD+EK D   
Sbjct: 855  DNMGLESVSEEALSSREQTKRPKLSCSRKKKSAESTALVCRDGAPTNTPGVDNEKPDSET 914

Query: 1009 IPEVFPPKMVALHRVRWNMNMGSERWLCYGGASGVLRCQQIELSLTDKKWALKR 1062
            IPEVFPPKM ALH+VRWN+N GSERWLC+GGA+G++RCQ+I  S  DKK ALKR
Sbjct: 915  IPEVFPPKMAALHKVRWNVNKGSERWLCFGGANGLVRCQEIVFSNIDKKMALKR 968



 Score =  330 bits (845), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 209/442 (47%), Positives = 266/442 (60%), Gaps = 80/442 (18%)

Query: 1   MEEEAANDDNVCIAKLFGXXXXXXXXXXXXXXXXXPKETQTVAVVSAINGGAD------- 53
           MEEE    DN+ IA LF                   KE+++VA  SA     +       
Sbjct: 1   MEEE---KDNLSIATLFNIKERKKKKKKKKTKAN--KESESVADDSATAANHEGGGGSTS 55

Query: 54  --TGPRISLFDYSVENFFRDMDTIARLCGNEEQHHIDLDQSEIQRMSSSVTFLRQWRDFK 111
               P+ISLFD S ENFF DMDTIA+LCG EE+ +I ++QSEI+RM SSVTFLR+W+DFK
Sbjct: 56  SGANPKISLFDISAENFFEDMDTIAKLCG-EEERNIAVEQSEIKRMFSSVTFLREWKDFK 114

Query: 112 YPSRSIRFAHGLESSECCQGKDV-GALSLPQFSSAIVPKHDMQKE-----VESQDSRDFV 165
           YPS+SIRF++G+ SSEC +  D+   ++LPQFSSA VPKH+MQKE      + Q+S+DFV
Sbjct: 115 YPSKSIRFSYGIGSSECYERNDIKDDINLPQFSSATVPKHNMQKEEQLGDAKPQESKDFV 174

Query: 166 MNVGGSIWALDWCPRIHEDPDCSIKCEFIAVAAHPPGSSYHKIGASLAGRGVVQIWCIVN 225
           MNVGGS+WALDWCPR+H +PDCSIKCEFIAVAAHPPGSSYHK+GASL GRG VQIWC++N
Sbjct: 175 MNVGGSVWALDWCPRMHGEPDCSIKCEFIAVAAHPPGSSYHKMGASLTGRGAVQIWCLLN 234

Query: 226 VRGQNEDTSSVTEKRKGRPKKDGGTNDKSSQMKRPRGRPRKNSTVIAVDDTNCDTQDMPS 285
            R  NE+ S +  K++ +PKKD  TNDKS ++KRPRGRPRKN                P+
Sbjct: 235 SREHNEEVSYLPGKKEKKPKKDTATNDKSIEIKRPRGRPRKN----------------PT 278

Query: 286 LNIRGYNEDTSSVTEKRKGRPKKDGGTNDKSSQMKRPRGRPRKNSTVIAMDETNCDTQDM 345
            N    NE+ S +T KRK                   RGRP+KN T IA+D TNC T+ +
Sbjct: 279 EN----NEEISPITNKRK-------------------RGRPKKNPTAIAVDSTNCGTKYI 315

Query: 346 PSLNISGQNEDTS----HVTEKRKGRPKKDGGTNDKLSQIKRPKGRPKKSSTDLDKTNCE 401
            S ++   N + +     +T K K RPK     N K   +  P              NCE
Sbjct: 316 ASGSVPNGNNENNEEILRITYKSKKRPKGRPKKNSKDGTVSDP--------------NCE 361

Query: 402 TQYLPSLAVQFAENSTDFSALD 423
            Q++P L VQ  + S +F + D
Sbjct: 362 NQFVP-LTVQLPD-SAEFISPD 381