Miyakogusa Predicted Gene

Lj0g3v0062259.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0062259.2 Non Characterized Hit- tr|C0PFG6|C0PFG6_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,59.65,2e-19,60S ACIDIC
RIBOSOMAL PROTEIN FAMILY MEMBER,NULL; Ribosomal_60s,Ribosomal protein
60S; seg,NULL,CUFF.3017.2
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060600.1 | 60S acidic ribosomal protein | HC | chr1:26385...    99   1e-21
Medtr2g085085.2 | 60S acidic ribosomal protein | HC | chr2:36125...    89   8e-19
Medtr2g085085.1 | 60S acidic ribosomal protein | HC | chr2:36125...    89   8e-19
Medtr0227s0020.1 | 60S acidic ribosomal protein | HC | scaffold0...    85   1e-17
Medtr2g085105.1 | ribosomal protein | LC | chr2:36132354-3613060...    49   8e-07

>Medtr1g060600.1 | 60S acidic ribosomal protein | HC |
          chr1:26385779-26387969 | 20130731
          Length = 112

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 59/64 (92%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MKV+AAY+LAVLGG+N+PSA  IK I+GSVG DA+D+RI SFLSE+KGKD+AEVIA+G+E
Sbjct: 1  MKVVAAYLLAVLGGDNTPSAKTIKDILGSVGADAEDNRIESFLSEIKGKDIAEVIASGRE 60

Query: 61 KLAS 64
          KLAS
Sbjct: 61 KLAS 64


>Medtr2g085085.2 | 60S acidic ribosomal protein | HC |
           chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MK+IAAY+LAVLGGN SPSA+++K+I+GSVG +A+D  I   LSE+KGKD AE+IA+G+E
Sbjct: 1   MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           KLAS                                       SDDDMGFSLFD
Sbjct: 61  KLAS-VPSGGGAVAVSAATGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113


>Medtr2g085085.1 | 60S acidic ribosomal protein | HC |
           chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1   MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
           MK+IAAY+LAVLGGN SPSA+++K+I+GSVG +A+D  I   LSE+KGKD AE+IA+G+E
Sbjct: 1   MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61  KLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 114
           KLAS                                       SDDDMGFSLFD
Sbjct: 61  KLAS-VPSGGGAVAVSAATGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113


>Medtr0227s0020.1 | 60S acidic ribosomal protein | HC |
          scaffold0227:7789-5926 | 20130731
          Length = 113

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKE 60
          MK+IAAYMLAVLGGN++PSA +IK I+ SVG +A+D  I   LSE+KGKD AE+IA+G+E
Sbjct: 1  MKIIAAYMLAVLGGNSAPSADDIKTILSSVGVEAEDSNIELLLSEVKGKDFAELIASGRE 60

Query: 61 KLAS 64
          KLAS
Sbjct: 61 KLAS 64


>Medtr2g085105.1 | ribosomal protein | LC | chr2:36132354-36130601
          | 20130731
          Length = 51

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%), Gaps = 1/39 (2%)

Query: 1  MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRI 39
          MK+I AY+LAVLGGN SPSAA++K+I+GS G     D++
Sbjct: 1  MKIIVAYLLAVLGGNQSPSAADLKQILGS-GSQVMKDKV 38