Miyakogusa Predicted Gene

Lj0g3v0060379.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0060379.3 Non Characterized Hit- tr|I1M1P3|I1M1P3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,63.64,0.000000009,seg,NULL,CUFF.2675.3
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g016870.1 | RING/FYVE/PHD-type zinc finger protein | HC | ...    54   3e-08

>Medtr2g016870.1 | RING/FYVE/PHD-type zinc finger protein | HC |
           chr2:5324170-5317931 | 20130731
          Length = 545

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 28/36 (77%)

Query: 23  SPGAFVECSPEGSTVTTHTQENCCFYGSQSITATDI 58
           S GAFV CS EGS VTT T ENC FYGSQS+ A+DI
Sbjct: 482 SKGAFVGCSLEGSIVTTRTHENCRFYGSQSLNASDI 517