Miyakogusa Predicted Gene

Lj0g3v0058969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0058969.1 Non Characterized Hit- tr|I1L3L8|I1L3L8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,43.14,5e-17,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT
CLPX,Clp protease, ATP-binding subunit ClpX; HSL AND ,CUFF.2633.1
         (566 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit ...   495   e-140
Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit ...   458   e-129
Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC | chr...   175   1e-43
Medtr8g056860.1 | ATP-dependent zinc metalloprotease FTSH protei...    53   8e-07
Medtr3g462930.1 | ATP-dependent zinc metalloprotease FTSH protei...    50   8e-06

>Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr6:20566263-20573202 | 20130731
          Length = 662

 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 269/382 (70%), Positives = 315/382 (82%), Gaps = 11/382 (2%)

Query: 185 IFNALNQFVVGQEKPKKLLSVAVYNHYIRLRLATTQPESQSSD-------QDTDLVQPEK 237
           I   L++FV+GQ + KK+LSVAVYNHY R+  AT  P+   +D        D + V+ EK
Sbjct: 252 ICKGLDKFVIGQGRAKKVLSVAVYNHYKRIYHATL-PKGSGADSGISGILDDDENVELEK 310

Query: 238 SNVLLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQAGYVGEDVESILYKLLVEADFD 297
           SNVLL+GPTGSGKTLLAKTLAR VNVPF IADATT TQAGYVGEDVESILYKLL  AD++
Sbjct: 311 SNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADYN 370

Query: 298 VELAQRGIVYVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGARKHQS 357
           V  AQ+GI+Y+DEVDKITKK ESLNI RDVSGEGVQQALLKMLE T+V+VP+KGARK+  
Sbjct: 371 VAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKNPR 430

Query: 358 GDSVLIDTKNILFICGGAFVNLEKIISERKQDSSIGFGVPVRANMRACGLPDAAVTSSLL 417
           GD++ IDTKNILFICGGAF++LEK ISER+QDSSIGFG PVRAN+R+  + D+AV SSLL
Sbjct: 431 GDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANIRSGRIIDSAVASSLL 490

Query: 418 ENVESGDLIAYGLIPEFVGRFPILAGLSALSEDQLLQVLIEPKNALVKQYKKMFRMNDVN 477
           E+VES DLIAYGLIPEF+GRFPIL  LSAL+E+QL+QVL EPK+AL KQYKK+  MN+V 
Sbjct: 491 ESVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQVLTEPKHALGKQYKKLVGMNEVK 550

Query: 478 LHFTDNALRLIAKKAMAKNTGARGLRALLENILTEAMFEVPD-KADIGNIEGVLVDEEAV 536
           LHFTD ALR+IAKKAMAKNTGARGLRAL+ENILT+AM+E+PD K     I+ V+VDEE+V
Sbjct: 551 LHFTDKALRMIAKKAMAKNTGARGLRALIENILTDAMYEIPDIKTGSDRIDAVVVDEESV 610

Query: 537 GSLNGHGCGAKILYRDNNGSLE 558
           GSL   GCG KIL  D  G+LE
Sbjct: 611 GSLTAPGCGGKILRGD--GALE 630



 Score = 89.4 bits (220), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 13/82 (15%)

Query: 88  IRADMNCPRCSRNMSVIFSNRPL-------------SISGHQPGLYQALNLCPSCKTAFY 134
           IRA+ NCPRCS++M++ FSNR +             ++  +  G YQA+NLCP+CKTA++
Sbjct: 31  IRAEANCPRCSKDMNLFFSNRHMQSNGGDSGGGNGENLGSNGDGGYQAVNLCPNCKTAYH 90

Query: 135 FRPLKLSPLHGTFIEIARLNHH 156
           FRP   SPL GTF+EI R++++
Sbjct: 91  FRPYNTSPLQGTFVEIGRVSNN 112


>Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr3:41648807-41642783 | 20130731
          Length = 581

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/378 (65%), Positives = 301/378 (79%), Gaps = 16/378 (4%)

Query: 185 IFNALNQFVVGQEKPKKLLSVAVYNHYIRLRLATTQPESQSSDQDTD-----------LV 233
           I   L++ V+GQE+ KK+LSVAVYNHY R+     +    + D + D            V
Sbjct: 169 ICKGLDKHVIGQERAKKVLSVAVYNHYKRIY---HEKLWHAGDSNIDGKADVVVDDDDDV 225

Query: 234 QPEKSNVLLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQAGYVGEDVESILYKLLVE 293
           + EKSN+LL+GPTGSGKTLLAKTLAR VNVPF IADATT TQAGYVGEDVESILYKLL  
Sbjct: 226 ELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAA 285

Query: 294 ADFDVELAQRGIVYVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGAR 353
           AD++V  AQ+GIVY+DEVDKITKK ESLNI RDVSGEGVQQALLKMLE T+V+VP+KGAR
Sbjct: 286 ADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGAR 345

Query: 354 KHQSGDSVLIDTKNILFICGGAFVNLEKIISERKQDSSIGFGVPVRANMRACGLPDAAVT 413
           KH  GD++ IDTKNILFICGGAF++LEK ISER+QDSSIGFG PVRA M+A  + +A++ 
Sbjct: 346 KHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRAKMKAGSVTEASIA 405

Query: 414 SSLLENVESGDLIAYGLIPEFVGRFPILAGLSALSEDQLLQVLIEPKNALVKQYKKMFRM 473
           SSLL  VES DLIAYGLIPEFVGRFPIL  LSAL+E+QL+QVL EPK+AL KQYKK F++
Sbjct: 406 SSLLGTVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLTEPKSALEKQYKKTFQI 465

Query: 474 NDVNLHFTDNALRLIAKKAMAKNTGARGLRALLENILTEAMFEVPD-KADIGNIEGVLVD 532
           N V LHFT++A + IA++AM+KNTGARGLRA++E+IL +AM+E+PD +     I+ V+VD
Sbjct: 466 NGVKLHFTESARKSIARQAMSKNTGARGLRAIIESILVDAMYEIPDIRTGDDVIDAVVVD 525

Query: 533 EEAVGSLNGHGCGAKILY 550
           E++VG   G   GAKILY
Sbjct: 526 EDSVGG-EGSVRGAKILY 542


>Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC |
           chr4:56399353-56401236 | 20130731
          Length = 225

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/128 (71%), Positives = 105/128 (82%), Gaps = 5/128 (3%)

Query: 241 LLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQAGYVGEDVESILYKLLVEADFDVEL 300
           LLIGPT SGKTLL KTLARIVNVPF +AD+TTFTQAGYVG+DV SILY LL EADFDVEL
Sbjct: 74  LLIGPTDSGKTLLPKTLARIVNVPFTMADSTTFTQAGYVGQDVHSILYNLLQEADFDVEL 133

Query: 301 AQRGIVYVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGARKHQSGDS 360
           AQ GIVY+DE+DKIT K ES++ GRDVSGEGVQ ALLKMLEST   +PDK    + +G  
Sbjct: 134 AQPGIVYIDEIDKITNKSESISGGRDVSGEGVQHALLKMLEST---IPDKTDIDNING-- 188

Query: 361 VLIDTKNI 368
           VL+D + +
Sbjct: 189 VLVDEEAV 196



 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 41/50 (82%), Gaps = 1/50 (2%)

Query: 517 VPDKADIGNIEGVLVDEEAVGSLNGHGCGAKILYRDNNGSLEGQARAICL 566
           +PDK DI NI GVLVDEEAVG +NG GCGAKI+ RD +G+LE QAR +CL
Sbjct: 177 IPDKTDIDNINGVLVDEEAVGQVNGTGCGAKIICRD-DGALECQARTMCL 225


>Medtr8g056860.1 | ATP-dependent zinc metalloprotease FTSH protein |
           HC | chr8:18930054-18944115 | 20130731
          Length = 988

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 38/188 (20%)

Query: 240 VLLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQAGYVGEDVESILYKLLVEADFDVE 299
           VLL GP G+GKTL A+TLA+   +PF  A    FT +   G    + ++           
Sbjct: 509 VLLSGPPGTGKTLFARTLAKQSGLPFVFASGAEFTDSEKSGAAKINKMFS---------- 558

Query: 300 LAQRG---IVYVDEVDKITKKGESLNIGRDVSGEGVQQALLKMLESTVVSVPDKGARKHQ 356
           LA+R     V+VDE+D I  +    +  +D   +   +AL+  L+            K +
Sbjct: 559 LARRNAPCFVFVDEIDAIAGR----HTRKDPRRKATFEALITQLD----------GEKEK 604

Query: 357 SGDSVLIDTKNILFICGGAFVNLEKIISERKQDSSIGFGVPVRANMRA-CGLPDAAVTSS 415
           +G   +   + ++FIC           + R  +  + F  P R + R   GLPDA     
Sbjct: 605 TGIDRVSLRQAVIFICA----------TNRADELDLDFVRPGRIDRRLYIGLPDAEQRIK 654

Query: 416 LLENVESG 423
           + +   SG
Sbjct: 655 IFDVHSSG 662


>Medtr3g462930.1 | ATP-dependent zinc metalloprotease FTSH protein |
           HC | chr3:25178238-25186964 | 20130731
          Length = 791

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 12/120 (10%)

Query: 224 QSSDQDTDLVQPEKSNVLLIGPTGSGKTLLAKTLARIVNVPFAIADATTFTQ--AGYVGE 281
           ++ D+ T L       VLL+G  G+GKTLLAK +A   +VPF    A+ F +   G    
Sbjct: 327 RNPDRYTRLGARPPRGVLLVGLPGTGKTLLAKAVAGEADVPFISCSASEFVELFVGMGAS 386

Query: 282 DVESILYKLLVEADFDVELAQRGIVYVDEVDKITKK--GESLNIGRDVSGEGVQQALLKM 339
            V  +  +   EA          I+++DE+D + K   G+  N+G D   + + Q L +M
Sbjct: 387 RVRDLFARAKREAP--------SIIFIDEIDAVAKSRDGKFRNVGNDEREQTLNQLLTEM 438