Miyakogusa Predicted Gene

Lj0g3v0058309.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0058309.1 tr|B9H863|B9H863_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_651728 PE=4
SV=1,50.33,9e-18,seg,NULL,CUFF.2579.1
         (347 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g449770.1 | transcription factor | HC | chr3:16987989-1699...   253   3e-67

>Medtr3g449770.1 | transcription factor | HC |
           chr3:16987989-16990900 | 20130731
          Length = 511

 Score =  253 bits (645), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 163/349 (46%), Positives = 200/349 (57%), Gaps = 40/349 (11%)

Query: 1   MNNSAPDWNFGSDTCLTNQKK-PIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQV 59
           MNN+ PDWNFG D+ +TNQKK P+G+D++LVE+LWQNGQ+VL SQ +KK +VN+  SRQV
Sbjct: 1   MNNTIPDWNFGIDSFVTNQKKQPMGLDHELVELLWQNGQVVLNSQTNKKQLVNN--SRQV 58

Query: 60  NKKFQPTLRTSDPFGMIQDDETISWIQ-YPPDHXXXXXXXXXXXXXXXXXXXXXYRQIRQ 118
           +K  Q T  ++    +IQDDET+SWIQ YP +                      +     
Sbjct: 59  HKNLQSTTLSN----LIQDDETVSWIQQYPIEDPLEQELCSNLLSELPPCNVESFNS--- 111

Query: 119 FGDAKFSKLDDSSMKPSCVQEFSGIPMPAPKFH--ASDSYQKN-------KVQNFPHFSA 169
                      ++ KP  VQEF   PM AP+FH    DS Q+N       KV NF HFS 
Sbjct: 112 ---------QPTNTKPPFVQEF---PMSAPRFHHLVPDSSQRNNDLCGSSKVVNFSHFSR 159

Query: 170 LPIVSTASAN--AHLRDKIAGNNVSKGEIRECSVMTVGSSHCGSNHIPQDPDISRASSNG 227
            P V+ AS N  A+LRDKI GN +S+ ++RECS MTVGSS+CGSN + QDPD+SR SSNG
Sbjct: 160 HPNVTLASTNGDANLRDKITGN-LSQCDVRECSTMTVGSSYCGSNQVQQDPDVSRVSSNG 218

Query: 228 AWTTTLSAEPEAGRDDVHRTIPQCEKGKPEMLEPTMXXXXXXXXXXXXXXXXXXXXRSQG 287
            W T LS EPE  R+DV +TIP+ E GK E LEP                      RS  
Sbjct: 219 VW-TNLSTEPEQVRNDVQKTIPRHENGKSEKLEPAF-TSSSGGSGSSLGKTCSLSTRSHD 276

Query: 288 EKRKGIDVE---EQSEDTELKSAVGNKXXXXXXXXXXXXXXEVHNLSER 333
           +KRK +DVE   EQSEDTELKS V  K              EVHNLSER
Sbjct: 277 KKRKVMDVEDSVEQSEDTELKSGVRKKTSQRSGSARRNRAAEVHNLSER 325