Miyakogusa Predicted Gene

Lj0g3v0057669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0057669.1 tr|A8I9X7|A8I9X7_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_141205 PE=4
SV=1,36.02,5e-19,YbeD-like,NULL; DUF493,Uncharacterised protein family
UPF0250; seg,NULL,CUFF.2534.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g085280.1 | DUF493 family protein | HC | chr3:38539441-385...   227   6e-60

>Medtr3g085280.1 | DUF493 family protein | HC |
           chr3:38539441-38536068 | 20130731
          Length = 205

 Score =  227 bits (578), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 139/206 (67%), Gaps = 8/206 (3%)

Query: 1   MACRRMLRYSTILTEPLLLCPSNLNFNHHYHIHIASRKCNNLKSITIKPRQFHSPKPPIA 60
           MACR MLR S ++ EPL               ++   K    +  TIK R FH     + 
Sbjct: 1   MACRSMLR-SAMIVEPLQFQFQFQFQFKPLLFNLKPNKRGGFRCRTIKARPFHRGNGVLR 59

Query: 61  CSSIETTXXXXXXXXXXXXETVLKAISEVSKSEGRVG-------GGTVADDSTKEWMALD 113
           CS  +T             E VLKAISEVSK+EGR+G       GGTV DDST EW+ALD
Sbjct: 60  CSRNDTPSSSFHDDQGPPQEAVLKAISEVSKTEGRIGQTTNMVIGGTVTDDSTNEWVALD 119

Query: 114 QKVNTYPTVRGFTAIGTGGQDFVQAMLVAVESVIQQPIPQGQVKQKLSSGGKYVSVNIGP 173
           +KVNTYPTVRGFTAIGTGG DFVQAM+VAVESVIQQPIPQG VK K+S+ GKYVSVNIGP
Sbjct: 120 KKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKHKVSARGKYVSVNIGP 179

Query: 174 IEVVSFEQVQAVYNAMRRDGRIKYFL 199
           ++VVS EQVQAVYNAMRRD R+KYFL
Sbjct: 180 VQVVSSEQVQAVYNAMRRDDRMKYFL 205