Miyakogusa Predicted Gene

Lj0g3v0057569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0057569.1 Non Characterized Hit- tr|I1R080|I1R080_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,45.1,0.000000000000002,seg,NULL; HCP-like,NULL; no
description,NULL; no description,Tetratricopeptide-like
helical,CUFF.2546.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g080640.1 | HCP family protein with MYND-type zinc finger ...   296   9e-81
Medtr3g085330.1 | HCP family protein with MYND-type zinc finger ...   271   3e-73
Medtr2g045140.1 | HCP family protein with MYND-type zinc finger ...   236   1e-62
Medtr3g099300.1 | HCP family protein with MYND-type zinc finger ...   236   2e-62
Medtr2g045135.1 | HCP family protein with MYND-type zinc finger ...   236   2e-62
Medtr2g045140.3 | HCP family protein with MYND-type zinc finger ...   203   1e-52
Medtr3g099300.2 | HCP family protein with MYND-type zinc finger ...   202   3e-52
Medtr2g045140.2 | HCP family protein with MYND-type zinc finger ...   146   1e-35
Medtr2g045140.4 | HCP family protein with MYND-type zinc finger ...   114   1e-25

>Medtr8g080640.1 | HCP family protein with MYND-type zinc finger
           protein | HC | chr8:34684620-34682760 | 20130731
          Length = 381

 Score =  296 bits (759), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 157/233 (67%), Positives = 173/233 (74%), Gaps = 17/233 (7%)

Query: 1   MRTRRGPCYPQ-----NMCSDVGFPKRKNDLHTHMQKDSILTRKRQKK--SPAATSGDDH 53
           MRTR G CYP+      MCS   F KRK        +D++   KR KK      T+  D 
Sbjct: 1   MRTRTGACYPEPGIVTKMCS---FGKRK-------PRDTLFCAKRHKKCSEKKTTTNYDF 50

Query: 54  FESLPDDLVIXXXXXXXXXXXXXXXXXXVLITCKRLNSLGLNSLVLAKASSRIFSIRAKD 113
           FESLPDD+VI                  VL+T KRL +L LNSLVL+KAS R FSIRAK+
Sbjct: 51  FESLPDDIVISIFCRLSSTATSPSDFVSVLLTSKRLKTLALNSLVLSKASPRTFSIRAKN 110

Query: 114 WSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAISSHARALYSLAVI 173
           W ESA RFLKQCA+AGNVEACYTLGMIRFYCLQNRGSGASLMAKAA++SHARALYSLAVI
Sbjct: 111 WCESAQRFLKQCAEAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHARALYSLAVI 170

Query: 174 QFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGYGCRKNIIEG 226
           QFNGSGGTKSDKDLRAGVALCARAAFLGHIDALRE+GHCLQDGYG ++NI EG
Sbjct: 171 QFNGSGGTKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNIAEG 223


>Medtr3g085330.1 | HCP family protein with MYND-type zinc finger
           protein | HC | chr3:38568194-38569628 | 20130731
          Length = 364

 Score =  271 bits (694), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/188 (70%), Positives = 152/188 (80%), Gaps = 2/188 (1%)

Query: 39  KRQKKSPAATSGDDHFESLPDDLVIXXXXXXXXXXXXXXXXXXVLITCKRLNSLGLNSLV 98
           KR K+ P  TS  D FE LPDD+V+                  VLITCKRLN L LNS+V
Sbjct: 9   KRHKRMPQNTS--DFFELLPDDIVLSILGKLSSTATSPSDFISVLITCKRLNGLSLNSVV 66

Query: 99  LAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKA 158
           L+KAS++  S++AK+W +SAHRFLK+C DAGN+EACYTLGMIRFYCLQNRGSGASLMAKA
Sbjct: 67  LSKASNKTLSVKAKNWCDSAHRFLKRCVDAGNIEACYTLGMIRFYCLQNRGSGASLMAKA 126

Query: 159 AISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGYG 218
           A+ SHA +LYSLAVIQFNGSGGTK+DKDLRAGVALCARAAFLGHID LRE+GHCLQDGYG
Sbjct: 127 AMKSHAPSLYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDGLRELGHCLQDGYG 186

Query: 219 CRKNIIEG 226
            ++N+IEG
Sbjct: 187 VKQNVIEG 194


>Medtr2g045140.1 | HCP family protein with MYND-type zinc finger
           protein | HC | chr2:19635531-19634020 | 20130731
          Length = 344

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/189 (58%), Positives = 136/189 (71%)

Query: 38  RKRQKKSPAATSGDDHFESLPDDLVIXXXXXXXXXXXXXXXXXXVLITCKRLNSLGLNSL 97
           R+  K         D FE  PDD+V+                   L+TCKRLN LG + +
Sbjct: 2   RRPMKHPHKKNHNQDFFEDFPDDIVVFILTKLSSTASSPSHFFNTLLTCKRLNRLGFHPM 61

Query: 98  VLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAK 157
           VL+KA  ++ +I+ K+WSE++H FLK+C + GNV+ACYTLGMIRFYCL+NR SG SL+AK
Sbjct: 62  VLSKAGPKVLAIKPKNWSENSHHFLKRCVNVGNVDACYTLGMIRFYCLRNRRSGVSLIAK 121

Query: 158 AAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGY 217
           AA+  HA ALYSLAVIQFNGSGGTK DKDLRAGVAL ARA+ LGHIDALRE+GHCLQDGY
Sbjct: 122 AAMKLHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARASLLGHIDALRELGHCLQDGY 181

Query: 218 GCRKNIIEG 226
           G ++N+ EG
Sbjct: 182 GVKQNVTEG 190


>Medtr3g099300.1 | HCP family protein with MYND-type zinc finger
           protein | HC | chr3:45519237-45520950 | 20130731
          Length = 351

 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 136/189 (71%)

Query: 38  RKRQKKSPAATSGDDHFESLPDDLVIXXXXXXXXXXXXXXXXXXVLITCKRLNSLGLNSL 97
           R+  K         D FE  PDD+V+                   L+TCKRLN LG + +
Sbjct: 2   RRPMKHPHKKNHNQDFFEDFPDDIVVFILTKLSSTASSPSHFFNTLLTCKRLNRLGFHPM 61

Query: 98  VLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAK 157
           VL+KA  ++ +++ K+WSE++H FLK+C + GNV+ACYTLGMIRFYCL+NR SG SL+AK
Sbjct: 62  VLSKAGPKVLAVKPKNWSENSHHFLKRCVNVGNVDACYTLGMIRFYCLRNRRSGVSLIAK 121

Query: 158 AAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGY 217
           AA+  HA ALYSLAVIQFNGSGGTK DKDLRAGVAL ARA+ LGHIDALRE+GHCLQDGY
Sbjct: 122 AAMKLHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARASLLGHIDALRELGHCLQDGY 181

Query: 218 GCRKNIIEG 226
           G ++N+ EG
Sbjct: 182 GVKQNVTEG 190


>Medtr2g045135.1 | HCP family protein with MYND-type zinc finger
           protein | HC | chr2:19833991-19832443 | 20130731
          Length = 351

 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 136/189 (71%)

Query: 38  RKRQKKSPAATSGDDHFESLPDDLVIXXXXXXXXXXXXXXXXXXVLITCKRLNSLGLNSL 97
           R+  K         D FE  PDD+V+                   L+TCKRLN LG + +
Sbjct: 2   RRPMKHPHKKNHNQDFFEDFPDDIVVFILTKLSSTASSPSHFFNTLLTCKRLNRLGFHPM 61

Query: 98  VLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMAK 157
           VL+KA  ++ +++ K+WSE++H FLK+C + GNV+ACYTLGMIRFYCL+NR SG SL+AK
Sbjct: 62  VLSKAGPKVLAVKPKNWSENSHHFLKRCVNVGNVDACYTLGMIRFYCLRNRRSGVSLIAK 121

Query: 158 AAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGY 217
           AA+  HA ALYSLAVIQFNGSGGTK DKDLRAGVAL ARA+ LGHIDALRE+GHCLQDGY
Sbjct: 122 AAMKLHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARASLLGHIDALRELGHCLQDGY 181

Query: 218 GCRKNIIEG 226
           G ++N+ EG
Sbjct: 182 GVKQNVTEG 190


>Medtr2g045140.3 | HCP family protein with MYND-type zinc finger
           protein | HC | chr2:19635531-19634061 | 20130731
          Length = 284

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/130 (71%), Positives = 113/130 (86%)

Query: 97  LVLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMA 156
           +VL+KA  ++ +I+ K+WSE++H FLK+C + GNV+ACYTLGMIRFYCL+NR SG SL+A
Sbjct: 1   MVLSKAGPKVLAIKPKNWSENSHHFLKRCVNVGNVDACYTLGMIRFYCLRNRRSGVSLIA 60

Query: 157 KAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDG 216
           KAA+  HA ALYSLAVIQFNGSGGTK DKDLRAGVAL ARA+ LGHIDALRE+GHCLQDG
Sbjct: 61  KAAMKLHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARASLLGHIDALRELGHCLQDG 120

Query: 217 YGCRKNIIEG 226
           YG ++N+ EG
Sbjct: 121 YGVKQNVTEG 130


>Medtr3g099300.2 | HCP family protein with MYND-type zinc finger
           protein | HC | chr3:45519237-45520950 | 20130731
          Length = 291

 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 92/130 (70%), Positives = 113/130 (86%)

Query: 97  LVLAKASSRIFSIRAKDWSESAHRFLKQCADAGNVEACYTLGMIRFYCLQNRGSGASLMA 156
           +VL+KA  ++ +++ K+WSE++H FLK+C + GNV+ACYTLGMIRFYCL+NR SG SL+A
Sbjct: 1   MVLSKAGPKVLAVKPKNWSENSHHFLKRCVNVGNVDACYTLGMIRFYCLRNRRSGVSLIA 60

Query: 157 KAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDG 216
           KAA+  HA ALYSLAVIQFNGSGGTK DKDLRAGVAL ARA+ LGHIDALRE+GHCLQDG
Sbjct: 61  KAAMKLHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARASLLGHIDALRELGHCLQDG 120

Query: 217 YGCRKNIIEG 226
           YG ++N+ EG
Sbjct: 121 YGVKQNVTEG 130


>Medtr2g045140.2 | HCP family protein with MYND-type zinc finger
           protein | HC | chr2:19635531-19634089 | 20130731
          Length = 242

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 78/88 (88%)

Query: 139 MIRFYCLQNRGSGASLMAKAAISSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAA 198
           MIRFYCL+NR SG SL+AKAA+  HA ALYSLAVIQFNGSGGTK DKDLRAGVAL ARA+
Sbjct: 1   MIRFYCLRNRRSGVSLIAKAAMKLHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARAS 60

Query: 199 FLGHIDALREIGHCLQDGYGCRKNIIEG 226
            LGHIDALRE+GHCLQDGYG ++N+ EG
Sbjct: 61  LLGHIDALRELGHCLQDGYGVKQNVTEG 88


>Medtr2g045140.4 | HCP family protein with MYND-type zinc finger
           protein | HC | chr2:19635531-19634089 | 20130731
          Length = 221

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 58/64 (90%)

Query: 163 HARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALREIGHCLQDGYGCRKN 222
           HA ALYSLAVIQFNGSGGTK DKDLRAGVAL ARA+ LGHIDALRE+GHCLQDGYG ++N
Sbjct: 4   HAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVKQN 63

Query: 223 IIEG 226
           + EG
Sbjct: 64  VTEG 67