Miyakogusa Predicted Gene

Lj0g3v0056329.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0056329.1 Non Characterized Hit- tr|D7MG48|D7MG48_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,33.49,9e-19,ssb: single-stranded DNA-binding
protein,Single-strand DNA-binding; SSB,Primosome
PriB/single-strand,NODE_41833_length_825_cov_115.176971.path2.1
         (231 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g070840.1 | single-stranded DNA-binding protein | HC | chr...   364   e-101
Medtr1g021080.1 | organellar single-stranded DNA-binding protein...   151   6e-37
Medtr6g092780.1 | organellar single-stranded DNA-binding protein...    74   8e-14

>Medtr1g070840.1 | single-stranded DNA-binding protein | HC |
           chr1:31376098-31372434 | 20130731
          Length = 291

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/230 (76%), Positives = 196/230 (85%), Gaps = 4/230 (1%)

Query: 5   ASYPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTSWVNLT 64
           ASYPKP EI W K+L NSV+LIG V  P+EIKH PSGKV +WTRL+VKKNA+Q SW++LT
Sbjct: 61  ASYPKPPEISWNKDLSNSVNLIGFVANPIEIKHLPSGKVVAWTRLSVKKNASQMSWIHLT 120

Query: 65  FWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNS 124
           FWDELAHVA QHVQKGHQIHVSGRLV DTV++ +GKQQTYYKVVAQ+LNFIDRS S V S
Sbjct: 121 FWDELAHVASQHVQKGHQIHVSGRLVTDTVDSVDGKQQTYYKVVAQQLNFIDRSDSPVRS 180

Query: 125 QDQDSDFMMS-GNGRKAGYAANS-TGSVMELWQAFFANPGEWWDNRNKKRNPKAPDFKHK 182
            DQD DF+ S  NG+KA YA N  TGSV+ELWQAFFANPGEWWDNR  KRNPKAPDFKHK
Sbjct: 181 HDQDFDFITSDDNGKKASYATNGMTGSVVELWQAFFANPGEWWDNRRNKRNPKAPDFKHK 240

Query: 183 DTGEALWIEGRSTPSWVNSQLEIMDSRMGSFTGQ--RMPVDMVTTDEIFS 230
           DTGEALWI+GRSTP WV SQLEI+D RMGS+TGQ  RMPVDMV+ DE+ S
Sbjct: 241 DTGEALWIDGRSTPPWVKSQLEILDMRMGSYTGQNGRMPVDMVSADEMLS 290


>Medtr1g021080.1 | organellar single-stranded DNA-binding protein |
           HC | chr1:6250091-6256004 | 20130731
          Length = 268

 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 125/225 (55%), Gaps = 19/225 (8%)

Query: 7   YPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPS--GKVASWTRLAVKKNATQTSWVNLT 64
           + +P+ I W+  L NS S IG+V    E+KH  S  G    +T L V+K      WV L 
Sbjct: 59  FQRPATIRWKPRLENSASFIGSVAR--EVKHVNSKFGDFGVYTTLRVQKPDRSPFWVLLM 116

Query: 65  FWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNS 124
            W+ +A +A++H++    I VSG L     ++ +G     YK++ +ELNF+ RS   +  
Sbjct: 117 MWNNVAEIAYEHLKPNDLICVSGYL-----DSFDGNSDLGYKLMVKELNFVARS---LGY 168

Query: 125 QDQDSDFMMSGNGRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDT 184
           +D + +    G   KAG    + G+ + LWQ FFANP EWWD R  K NPK PDFKHKDT
Sbjct: 169 EDHEKEHKFEG--AKAG--NQNYGNPLHLWQVFFANPNEWWDQRKNKLNPKQPDFKHKDT 224

Query: 185 GEALWIEGRSTPSWVNSQLEIMDSRM--GSFTGQRMPVDMVTTDE 227
           GEALW+  +  P WV  QL+++DS+   G F G R  V     DE
Sbjct: 225 GEALWL-SKHNPPWVTKQLKLLDSKFSEGGFAGCRSRVTSWVYDE 268


>Medtr6g092780.1 | organellar single-stranded DNA-binding protein |
           HC | chr6:34938025-34943859 | 20130731
          Length = 490

 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 4/61 (6%)

Query: 139 KAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSW 198
           K+  A +S G   E W     NP +WWDNR  K+NPK PDFKHKDTGEALW+ G  +PSW
Sbjct: 411 KSKQAKDSKGD--ESWNDLLQNPAKWWDNRLDKKNPKGPDFKHKDTGEALWLRG--SPSW 466

Query: 199 V 199
           V
Sbjct: 467 V 467



 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 11/196 (5%)

Query: 2   STNASYPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTSWV 61
           S+ +   KP+EIP+Q +L NSV+LIGTV  P+  +    G  ++ T +    +      +
Sbjct: 60  SSKSKLQKPTEIPFQPKLANSVNLIGTVNKPIHFQTSTDGNPSAATVITRLGHDPSQFLI 119

Query: 62  NLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTY-YKVVAQELNFID---- 116
            L F  +LA  A  H++    +HV G+L  +  +    K Q Y ++V  Q LNF++    
Sbjct: 120 PLVFHGDLALTAQFHLKLNDVVHVEGQLSTEDDQIKLDKPQQYQFQVKVQSLNFVEGYPR 179

Query: 117 ------RSFSQVNSQDQDSDFMMSGNGRKAGYAANSTGSVMELWQAFFANPGEWWDNRNK 170
                  S  + + +D+  +  +  + +             + W+     P +W    + 
Sbjct: 180 VKKASLTSKEKSDIEDESENDEIKSSEKDIHSEKTEQHDTRKSWRDVINKPSQWKAVHSP 239

Query: 171 KRNPKAPDFKHKDTGE 186
           K +PK  DF+ K  GE
Sbjct: 240 KESPKNADFESKTEGE 255



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 152 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMD 207
           E W     NP +WWDNR  K+  +APDFKHKDTG  LW+  R +PSWV+S+L+ ++
Sbjct: 351 ESWNDLLQNPAKWWDNRVDKKYARAPDFKHKDTGVGLWL--RDSPSWVSSRLKELE 404



 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 132 MMSGNGRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKR----NPKAPDFKHKDTGEA 187
           +  G  +    A   TGS+   W     +P +WWD R+ KR    NPK PDFK KD   +
Sbjct: 256 LQPGLKQSTTSAKKYTGSLSSTWGDLLDDPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVS 315

Query: 188 LWIEGRS 194
           +W++  S
Sbjct: 316 IWLDKAS 322