Miyakogusa Predicted Gene
- Lj0g3v0056199.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0056199.1 tr|G5AVB1|G5AVB1_HETGA Zinc finger protein 511
OS=Heterocephalus glaber GN=GW7_07881 PE=4
SV=1,34.4,5e-19,ZINC_FINGER_C2H2_1,Zinc finger, C2H2; SUBFAMILY NOT
NAMED,NULL; UNCHARACTERIZED,NULL; C2H2 and C2HC
,NODE_21827_length_1175_cov_67.757446.path1.1
(242 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g029095.1 | zinc finger protein | HC | chr7:10183494-10186... 301 5e-82
Medtr7g029090.1 | C2H2-type zinc finger protein | HC | chr7:1018... 297 5e-81
Medtr7g029065.1 | transcription initiation factor TFIID subunit-... 139 2e-33
>Medtr7g029095.1 | zinc finger protein | HC | chr7:10183494-10186818
| 20130731
Length = 219
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 154/242 (63%), Positives = 174/242 (71%), Gaps = 38/242 (15%)
Query: 2 MEVEKPNLESGFPFWKPLPRMFPPDSPFFAPGNLERELLAKQVALEF--PEEKLELENWI 59
ME+E N +S FPFWKP+ R F PDSPFFA GNLERELL KQVALEF +EK +LE++I
Sbjct: 1 MELENQNQDSNFPFWKPISRKFQPDSPFFAIGNLERELLVKQVALEFELTQEKEQLEDFI 60
Query: 60 QEEAREVFCPIVGCRARLKSLEDFENHYSARHHSACCSVCSRVYPTSRLLSIHVSEEHDS 119
QE+ REVFCPI GC ARL S+EDFENHY ARH ++C
Sbjct: 61 QEDGREVFCPIAGCGARLASIEDFENHYYARHTASCS----------------------- 97
Query: 120 FFKAKVARGYDVYECLVEGCGLKFKSYTSRKQHLVDKHGFPKSFQFFKKAAPSKKERLKT 179
YECLVEGCGLKFKSY SR+ HLVDKH FP SF+FFKKA PSKK R+K+
Sbjct: 98 ------------YECLVEGCGLKFKSYKSRQHHLVDKHKFPTSFEFFKKALPSKKHRIKS 145
Query: 180 QHKQAAHKEDASGMMEVENAAMDDLVSAVSRLNTSDSTPSSISFGRR-PKGLSFVPRSVQ 238
Q K+ + KED SGMMEVENAAMDDLVSAVSRLNTSD+ PSSISFGRR KG+SFVPR+VQ
Sbjct: 146 QRKKPSQKEDTSGMMEVENAAMDDLVSAVSRLNTSDTAPSSISFGRRNTKGMSFVPRAVQ 205
Query: 239 RG 240
RG
Sbjct: 206 RG 207
>Medtr7g029090.1 | C2H2-type zinc finger protein | HC |
chr7:10180279-10181778 | 20130731
Length = 191
Score = 297 bits (761), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 144/178 (80%), Positives = 159/178 (89%), Gaps = 2/178 (1%)
Query: 64 REVFCPIVGCRARLKSLEDFENHYSARHHSACCSVCSRVYPTSRLLSIHVSEEHDSFFKA 123
REVFCPI GC ARL S+EDFENHY+ARH +A CSVCSRVYPTSRLLS+HVSE HDSFF+A
Sbjct: 3 REVFCPIAGCGARLASIEDFENHYNARH-TASCSVCSRVYPTSRLLSLHVSEAHDSFFQA 61
Query: 124 KVARGYDVYECLVEGCGLKFKSYTSRKQHLVDKHGFPKSFQFFKKAAPSKKERLKTQHKQ 183
KVARGYD+YECLVEGCGLKFKSY SR+ HLVDKH FP SF+FFKKA PSKK R+K+Q K+
Sbjct: 62 KVARGYDMYECLVEGCGLKFKSYKSRQHHLVDKHKFPTSFEFFKKALPSKKHRIKSQRKK 121
Query: 184 AAHKEDASGMMEVENAAMDDLVSAVSRLNTSDSTPSSISFGRR-PKGLSFVPRSVQRG 240
+ KED SGMMEVENAAMDDLVSAVSRLNTSD+ PSSISFGRR KG+SFVPR+VQRG
Sbjct: 122 PSQKEDTSGMMEVENAAMDDLVSAVSRLNTSDTAPSSISFGRRNTKGMSFVPRAVQRG 179
>Medtr7g029065.1 | transcription initiation factor TFIID
subunit-like protein, putative | HC |
chr7:10158682-10164491 | 20130731
Length = 538
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 87/107 (81%), Gaps = 3/107 (2%)
Query: 136 VEGCGLKFKSYTSRKQHLVDKHGFPKSFQ-FFKKAAPSKKERLKTQHKQAAHKEDASGMM 194
VEGCGLKFKS+ SR+QHLV+KH FP FFKK+ PSKK+R+K Q K+ +HKED SGM+
Sbjct: 429 VEGCGLKFKSHKSRQQHLVNKHKFPTYHSSFFKKSQPSKKQRVKCQRKKLSHKEDTSGMI 488
Query: 195 EVENAAMDDLVSAVSRLNTSDSTPSSISFG-RRPKGLSFVPRSVQRG 240
EVENAA+D+LVS VSR+NT DSTPSSIS G R KG+SFVPR+ Q G
Sbjct: 489 EVENAAIDNLVS-VSRMNTLDSTPSSISSGCRNTKGMSFVPRAFQYG 534