Miyakogusa Predicted Gene

Lj0g3v0056169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0056169.1 Non Characterized Hit- tr|B9RBH6|B9RBH6_RICCO
Ribonucleoside-diphosphate reductase small chain,
puta,85.11,0,Ribonuc_red_sm,Ribonucleotide reductase small subunit;
SUBFAMILY NOT NAMED,NULL; RIBONUCLEOSIDE-DIPH,CUFF.2468.1
         (326 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g469010.1 | ribonucleoside-diphosphate reductase small cha...   550   e-157
Medtr0268s0080.1 | ribonucleoside-diphosphate reductase small ch...   543   e-155
Medtr1g050472.1 | ribonucleoside-diphosphate reductase small cha...   543   e-154
Medtr7g029110.1 | ribonucleoside-diphosphate reductase small cha...   537   e-153
Medtr4g117370.1 | ribonucleoside-diphosphate reductase small cha...   490   e-139
Medtr6g005270.1 | ribonucleoside-diphosphate reductase small cha...    50   4e-06

>Medtr8g469010.1 | ribonucleoside-diphosphate reductase small chain
           | HC | chr8:25026278-25025046 | 20130731
          Length = 325

 Score =  550 bits (1418), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/326 (81%), Positives = 288/326 (88%), Gaps = 1/326 (0%)

Query: 1   MPVMAEEPLLAPNPDRFCMFPIQYPEIWQMYKKALASFWTAEEVDLSHDLRDWDSLNDGE 60
           MP   EEPLLAPNPDRFCMFPIQYP+IW+MYKKA ASFWTAEEVDLS DL+ W++L DGE
Sbjct: 1   MPSFPEEPLLAPNPDRFCMFPIQYPKIWEMYKKAEASFWTAEEVDLSSDLQHWNNLTDGE 60

Query: 61  RHFITHVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLETY 120
           RHFI+H+LAFFAASDGIVLENLAGRFMKEVQI+EARAFYGFQIAIENIHSEMYSLLLETY
Sbjct: 61  RHFISHILAFFAASDGIVLENLAGRFMKEVQISEARAFYGFQIAIENIHSEMYSLLLETY 120

Query: 121 IKDSTEKHRLFHAVETIPCVAKKAEWAMKWIDASDSFAERVVAFACVEGIFFSGSFCAIF 180
           I DS EK+RLFHA++TIPC+AKKA+WA+KWID+SDSFAER+VAFACVEGIFFSGSFCAIF
Sbjct: 121 ISDSAEKNRLFHAIDTIPCIAKKADWALKWIDSSDSFAERIVAFACVEGIFFSGSFCAIF 180

Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACXXXXXXXXXXXXXRVKGIVRDAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFAC             RV  IVRDAVEIEREFV
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRQKLSTERVVKIVRDAVEIEREFV 240

Query: 241 CDALPCALLGMNGDQMSQYIEFVADYWLEKLGCGKVYNVVNPFPWMELISLKGKTNFFEK 300
           CDALPCAL+GMNG+ MSQYIEFVAD  L +LGC KVYNV NPF WM+LISL+GKTNFFEK
Sbjct: 241 CDALPCALVGMNGELMSQYIEFVADRLLGELGCEKVYNVQNPFDWMDLISLQGKTNFFEK 300

Query: 301 RVGEYQIASVMNGDGDARVFNMDEEF 326
           RVGEYQ ASVMNG  D   F +DE+F
Sbjct: 301 RVGEYQKASVMNGGAD-YCFTLDEDF 325


>Medtr0268s0080.1 | ribonucleoside-diphosphate reductase small chain
           | HC | scaffold0268:22239-23602 | 20130731
          Length = 330

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/330 (80%), Positives = 288/330 (87%), Gaps = 4/330 (1%)

Query: 1   MPVMAEEPLLAPNPDRFCMFPIQYPEIWQMYKKALASFWTAEEVDLSHDLRDWDSLNDGE 60
           MP   EEPLLAPNPDRFCMFPIQYP+IW+MYKKA ASFWTAEEVDLS DL+ W++L DGE
Sbjct: 1   MPAFPEEPLLAPNPDRFCMFPIQYPKIWEMYKKAEASFWTAEEVDLSSDLKHWNNLTDGE 60

Query: 61  RHFITHVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLETY 120
           RHFI+HVLAFFAASDGIVLENLAGRFMKEVQI+EARAFYGFQIAIENIHSEMYSLL+ETY
Sbjct: 61  RHFISHVLAFFAASDGIVLENLAGRFMKEVQISEARAFYGFQIAIENIHSEMYSLLIETY 120

Query: 121 IKDSTEKHRLFHAVETIPCVAKKAEWAMKWIDASDSFAERVVAFACVEGIFFSGSFCAIF 180
           I DS EK+RLFHA+ETIPC+AKKA+WAMKWID+SDSFAER+VAFACVEGIFFSGSFCAIF
Sbjct: 121 ISDSAEKNRLFHAIETIPCIAKKADWAMKWIDSSDSFAERIVAFACVEGIFFSGSFCAIF 180

Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACXXXXXXXXXXXXXRVKGIVRDAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFAC             RVK IV +AVEIEREFV
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKKLTSERVKEIVCNAVEIEREFV 240

Query: 241 CDALPCALLGMNGDQMSQYIEFVADYWLEKLGCGKVYNVVNPFPWMELISLKGKTNFFEK 300
           C ALPCAL+GMNG  MS YIEFVAD  L +LGC KVYNV NPF WMELISL+GKTNFFEK
Sbjct: 241 CKALPCALVGMNGGLMSTYIEFVADRLLGELGCEKVYNVQNPFDWMELISLQGKTNFFEK 300

Query: 301 RVGEYQIASVM---NGDGDAR-VFNMDEEF 326
           RVGEYQ ASVM   NG+G A   F++DE+F
Sbjct: 301 RVGEYQKASVMNSLNGNGAADFCFSLDEDF 330


>Medtr1g050472.1 | ribonucleoside-diphosphate reductase small chain
           | HC | chr1:19456521-19458475 | 20130731
          Length = 330

 Score =  543 bits (1398), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/330 (80%), Positives = 286/330 (86%), Gaps = 4/330 (1%)

Query: 1   MPVMAEEPLLAPNPDRFCMFPIQYPEIWQMYKKALASFWTAEEVDLSHDLRDWDSLNDGE 60
           MP   EEPLLAPNPDRFCMFPIQYP+IW+MYKKA ASFWTAEEVDLS DL+ W +L DGE
Sbjct: 1   MPAFPEEPLLAPNPDRFCMFPIQYPKIWEMYKKAEASFWTAEEVDLSSDLKHWQNLTDGE 60

Query: 61  RHFITHVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLETY 120
           RHFI+HVLAFFAASDGIVLENLAGRFMKE+Q++EARAFYGFQIAIENIHSEMYSLLLETY
Sbjct: 61  RHFISHVLAFFAASDGIVLENLAGRFMKEIQVSEARAFYGFQIAIENIHSEMYSLLLETY 120

Query: 121 IKDSTEKHRLFHAVETIPCVAKKAEWAMKWIDASDSFAERVVAFACVEGIFFSGSFCAIF 180
           I DS EK+RLFHA+ETIPC+AKKA+WAMKWID+SDSFAER+VAFACVEGIFFSGSFCAIF
Sbjct: 121 ISDSAEKNRLFHAIETIPCIAKKADWAMKWIDSSDSFAERIVAFACVEGIFFSGSFCAIF 180

Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACXXXXXXXXXXXXXRVKGIVRDAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFAC             RVK IV DAVEIEREFV
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLSSERVKEIVCDAVEIEREFV 240

Query: 241 CDALPCALLGMNGDQMSQYIEFVADYWLEKLGCGKVYNVVNPFPWMELISLKGKTNFFEK 300
           C ALPCAL+GMNG  MS YIEFVAD  L +LGC KVYNV NPF WMELISL+GKTNFFEK
Sbjct: 241 CHALPCALVGMNGGLMSTYIEFVADRLLGELGCEKVYNVQNPFDWMELISLQGKTNFFEK 300

Query: 301 RVGEYQIASVM---NGDGDAR-VFNMDEEF 326
           RVGEYQ ASVM   NG+G A   F +DE+F
Sbjct: 301 RVGEYQKASVMNSLNGNGAADFCFKLDEDF 330


>Medtr7g029110.1 | ribonucleoside-diphosphate reductase small chain
           | HC | chr7:10197814-10196629 | 20130731
          Length = 330

 Score =  537 bits (1383), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/330 (80%), Positives = 286/330 (86%), Gaps = 4/330 (1%)

Query: 1   MPVMAEEPLLAPNPDRFCMFPIQYPEIWQMYKKALASFWTAEEVDLSHDLRDWDSLNDGE 60
           MP   EEPLLAPNPDRFCMFPIQYP+IW+MYKKA ASFWTAEEVDLS DL+ W++L DGE
Sbjct: 1   MPAFPEEPLLAPNPDRFCMFPIQYPKIWEMYKKAEASFWTAEEVDLSSDLKHWNNLTDGE 60

Query: 61  RHFITHVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLETY 120
           RHFI+HVLAFFAASDGIVLENLAGRFMKEVQI+EARAFYGFQIAIENIHSEMYSLL+ETY
Sbjct: 61  RHFISHVLAFFAASDGIVLENLAGRFMKEVQISEARAFYGFQIAIENIHSEMYSLLIETY 120

Query: 121 IKDSTEKHRLFHAVETIPCVAKKAEWAMKWIDASDSFAERVVAFACVEGIFFSGSFCAIF 180
           I DS EK+RLFHA+ETIPC+AKKA+WAMKWID+SDSFAER+VAFACVEGIFFSGSFCAIF
Sbjct: 121 ISDSAEKNRLFHAIETIPCIAKKADWAMKWIDSSDSFAERIVAFACVEGIFFSGSFCAIF 180

Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACXXXXXXXXXXXXXRVKGIVRDAVEIEREFV 240
           WLKKRGLMPGLTFSNELISRDEGLHCDFAC             RVK IV +AVEIEREFV
Sbjct: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLLKKLTSERVKEIVCNAVEIEREFV 240

Query: 241 CDALPCALLGMNGDQMSQYIEFVADYWLEKLGCGKVYNVVNPFPWMELISLKGKTNFFEK 300
           C ALPCAL+GMNG  MS YIEFVAD  L  LGC KVYNV NPF WM+LISL+G TNFFEK
Sbjct: 241 CYALPCALVGMNGGLMSTYIEFVADRLLGDLGCEKVYNVQNPFDWMDLISLQGNTNFFEK 300

Query: 301 RVGEYQIASVM---NGDGDAR-VFNMDEEF 326
           RVGEYQ ASVM   NG+G A   F++DE+F
Sbjct: 301 RVGEYQKASVMNSLNGNGAADFCFSLDEDF 330


>Medtr4g117370.1 | ribonucleoside-diphosphate reductase small chain
           | HC | chr4:48682564-48678758 | 20130731
          Length = 341

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/325 (71%), Positives = 268/325 (82%), Gaps = 3/325 (0%)

Query: 5   AEEPLLAPNPDRFCMFPIQYPEIWQMYKKALASFWTAEEVDLSHDLRDWDSLNDGERHFI 64
            EEP+L     RFCMFP++Y ++W+MYKKA ASFWTAEEVDLS+D++ W +L+D E+HFI
Sbjct: 17  TEEPILMKQTQRFCMFPVRYKQLWEMYKKAEASFWTAEEVDLSYDVQHWATLSDSEKHFI 76

Query: 65  THVLAFFAASDGIVLENLAGRFMKEVQIAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
           +HVLAFFA SDGIVLENLA RF+ +VQI EARAFYGFQIAIENIHSEMYSLLLETYIKDS
Sbjct: 77  SHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDS 136

Query: 125 TEKHRLFHAVETIPCVAKKAEWAMKWIDASDSFAERVVAFACVEGIFFSGSFCAIFWLKK 184
            EKH+LF+A+E +PCVA+KAEWA+ WI++S SFAER+V FACVEGIFFSGSFCAIFWLKK
Sbjct: 137 REKHKLFNAIENLPCVARKAEWALSWINSSTSFAERLVGFACVEGIFFSGSFCAIFWLKK 196

Query: 185 RGLMPGLTFSNELISRDEGLHCDFACXXXXXXXXXXXXXRVKGIVRDAVEIEREFVCDAL 244
           RGLMPGLTFSNELISRDEGLHCDFAC             RV+ IV +AVEIE EFVCDAL
Sbjct: 197 RGLMPGLTFSNELISRDEGLHCDFACMLYSLLLRQLDSERVQNIVHEAVEIETEFVCDAL 256

Query: 245 PCALLGMNGDQMSQYIEFVADYWLEKLGCGKVYNVVNPFPWMELISLKGKTNFFEKRVGE 304
           PCAL+GMN   MSQYI+FVAD  L  LGC K+YNV NPF WM+ ISL+GK NFFE+RVG+
Sbjct: 257 PCALIGMNSKLMSQYIKFVADRLLVSLGCLKIYNVENPFDWMDFISLQGKANFFERRVGD 316

Query: 305 YQIASVMNG---DGDARVFNMDEEF 326
           YQ ASVM+    DG   VF +DE+F
Sbjct: 317 YQKASVMSSLQDDGKNFVFKLDEDF 341


>Medtr6g005270.1 | ribonucleoside-diphosphate reductase small chain,
           putative | LC | chr6:682624-682876 | 20130731
          Length = 70

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 27/36 (75%)

Query: 268 LEKLGCGKVYNVVNPFPWMELISLKGKTNFFEKRVG 303
           L++LGC KVYNV NPF WM+LI L+GKT F    +G
Sbjct: 28  LDELGCEKVYNVHNPFDWMDLILLQGKTIFLISALG 63