Miyakogusa Predicted Gene

Lj0g3v0055339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0055339.1 Non Characterized Hit- tr|Q01DN1|Q01DN1_OSTTA
Putative 50S ribosomal protein L3 (ISS) OS=Ostreococcu,50,0.0002,50S
RIBOSOMAL PROTEIN L3,Ribosomal protein L3, bacterial/organelle-type;
Ribosomal_L3,Ribosomal
prot,NODE_17083_length_867_cov_472.347168.path1.1
         (220 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g118210.1 | 50S ribosomal protein L3P | HC | chr3:55341330...   355   3e-98
Medtr6g006970.1 | 50S ribosomal protein L3P | HC | chr6:1316494-...   127   7e-30
Medtr1g093060.1 | 50S ribosomal protein L3P | HC | chr1:41908852...   122   4e-28

>Medtr3g118210.1 | 50S ribosomal protein L3P | HC |
           chr3:55341330-55342663 | 20130731
          Length = 272

 Score =  355 bits (910), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 176/220 (80%), Positives = 189/220 (85%)

Query: 1   MEAGVGVMGTKLGMMSYFEENGXXXXXXXXGFKEGNIVTQLKTEATDGYDAVQVGYQRIR 60
           +EAGVGVMGTKLGMMS+F+ NG        GFKEGNIVTQ+KT+ATDGY+AVQVGY+R+R
Sbjct: 53  LEAGVGVMGTKLGMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVR 112

Query: 61  DRKLTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVSGTTIG 120
           DRKLTKPE+GHLEK GAIPMRHLQEFRLQS++GF+ NQRLVFDELF EGDLVDVSGTTIG
Sbjct: 113 DRKLTKPEMGHLEKAGAIPMRHLQEFRLQSVDGFEPNQRLVFDELFNEGDLVDVSGTTIG 172

Query: 121 KGFQGGIKRWNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTXXXXXXXX 180
           KGFQGGIKR NFKRGPMSHGSKSHRQLGSIGAGTTPGRVY GKKMPGRMGGT        
Sbjct: 173 KGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLK 232

Query: 181 XXXXXXXXNVVMIKGALPGKPGNLLRITPAKIVGKNIPKN 220
                   NV+MIKGALPGKPGNLLRI PAKIVGKNIPKN
Sbjct: 233 IVKIDKDLNVIMIKGALPGKPGNLLRIAPAKIVGKNIPKN 272


>Medtr6g006970.1 | 50S ribosomal protein L3P | HC |
           chr6:1316494-1310518 | 20130731
          Length = 294

 Score =  127 bits (320), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/210 (39%), Positives = 114/210 (54%), Gaps = 12/210 (5%)

Query: 6   GVMGTKLGMMSYFEENGXXXXXXXXGFKEGNIVTQLKTEATDGYDAVQVGYQRIRDRKLT 65
           G++  K GM +++++ G         + + NIV+Q+KT   +GY ++Q+G  + +++ LT
Sbjct: 49  GLVAVKCGMTAHWDKWGARIPISIL-WVDDNIVSQVKTPEKEGYCSLQIGCGQKKEKHLT 107

Query: 66  KPELGHLEKVGAIPMRHLQEFRLQSLE----GFDLNQRLVFDELFKEGDLVDVSGTTIGK 121
           KPE+GH    G    R LQEFR+        G  LN R      F  G  VD++G T GK
Sbjct: 108 KPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRH-----FVPGQYVDITGITKGK 162

Query: 122 GFQGGIKRWNFKRGPMSHG-SKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTXXXXXXXX 180
           GFQG I R NFK GP SHG SK+ R +GS G    P RV+ GKKMPGRMGG         
Sbjct: 163 GFQGVIDRHNFKGGPASHGNSKTERTMGSTGM-LGPCRVFKGKKMPGRMGGKQRTVKNVW 221

Query: 181 XXXXXXXXNVVMIKGALPGKPGNLLRITPA 210
                   N++ +KG +PG  GN + I  A
Sbjct: 222 VYKIDPARNLMWVKGQVPGATGNFVFIKDA 251


>Medtr1g093060.1 | 50S ribosomal protein L3P | HC |
           chr1:41908852-41905135 | 20130731
          Length = 347

 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 114/210 (54%), Gaps = 12/210 (5%)

Query: 6   GVMGTKLGMMSYFEENGXXXXXXXXGFKEGNIVTQLKTEATDGYDAVQVGYQRIRDRKLT 65
           GV+  K GM +++++ G         + + NIV+Q+KT   +GY ++Q+G  + +++ LT
Sbjct: 102 GVIAVKCGMTAHWDKWGARIPISIL-WVDDNIVSQVKTPEKEGYCSLQIGCGQKKEKHLT 160

Query: 66  KPELGHLEKVGAIPMRHLQEFRLQSLE----GFDLNQRLVFDELFKEGDLVDVSGTTIGK 121
           KPE+GH    G    R LQEFR+        G  LN R      F  G  VD++G T GK
Sbjct: 161 KPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRH-----FVPGQYVDITGITKGK 215

Query: 122 GFQGGIKRWNFKRGPMSHG-SKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTXXXXXXXX 180
           GFQG +K++ F  G  SHG SK+HR +GS G    P +V+ G+KMPGRMGG         
Sbjct: 216 GFQGVMKKYGFHGGSASHGNSKAHRIMGSTGI-LGPCKVFKGRKMPGRMGGKQRTVKNVW 274

Query: 181 XXXXXXXXNVVMIKGALPGKPGNLLRITPA 210
                   N++ +KG +PG  GN + I  A
Sbjct: 275 IYKIDPARNLMWVKGQVPGATGNFVFIKDA 304