Miyakogusa Predicted Gene

Lj0g3v0054489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054489.1 tr|B9NYQ5|B9NYQ5_PROMR NAD(P)H-quinone
oxidoreductase subunit N OS=Prochlorococcus marinus str. MIT
,39.29,8e-19,NdhN,NAD(P)H-quinone oxidoreductase, subunit
N,CUFF.2415.1
         (221 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g062890.1 | NADH-quinone oxidoreductase cyanobacterial sub...   345   1e-95

>Medtr3g062890.1 | NADH-quinone oxidoreductase cyanobacterial
           subunit N | HC | chr3:28437617-28439630 | 20130731
          Length = 224

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 171/227 (75%), Positives = 191/227 (84%), Gaps = 9/227 (3%)

Query: 1   MSAATSLGYGGPTCFHVTKRQQ-----QTRNNTIGMMTGWGGRRHYETSKKDVVGVVRCS 55
           M A+ SLG GGPTC ++ +  +     +  NN++ +M GW G++      K VV   +CS
Sbjct: 1   MLASASLGCGGPTCSNIQQPPRNSFMAENHNNSVRLMMGWRGKQCNSNRSKRVV---KCS 57

Query: 56  -GVGLGDFIGGDLLKPDLGRWLSDVEEHKALAIYSPHEGGYEGRYLSRLRRQGYYFLDLS 114
            G+GLGDFIGGDL+K D+GRWLSDVEEHKALAIY+PHEGGYEGRYLSRL+RQGYYFLDL+
Sbjct: 58  SGIGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLDLT 117

Query: 115 ARGLGDPETTLTKIHPVCPPHVGKQPIARWYFPPEVDYRLEALPPNAKGLVVCIIEAKVL 174
           ARGLGDPETTLTK+HPVCP H+GKQPIARWYFPPEVDYRLEALPPNAKGLVV IIEAKVL
Sbjct: 118 ARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVL 177

Query: 175 SKAELQFLALLPTLRPNVRVIAECGNWRKFMWKPLKEIAGLTAITEG 221
           SKAELQFLALLPTLRPNVRVIAECGNWRKFMWKPL EIAGLT   E 
Sbjct: 178 SKAELQFLALLPTLRPNVRVIAECGNWRKFMWKPLNEIAGLTTSQEA 224