Miyakogusa Predicted Gene

Lj0g3v0054479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054479.1 Non Characterized Hit- tr|D8U478|D8U478_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,41.27,1e-18,seg,NULL; Ycf54,Uncharacterised protein family
Ycf54,CUFF.2408.1
         (236 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g062920.1 | hypothetical protein | HC | chr3:28448457-2844...   223   9e-59

>Medtr3g062920.1 | hypothetical protein | HC |
           chr3:28448457-28445861 | 20130731
          Length = 216

 Score =  223 bits (569), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 125/236 (52%), Positives = 137/236 (58%), Gaps = 23/236 (9%)

Query: 2   MLGVATLTLGXXXXXXXXXXXXHPTTLASVNALTGVKRHSLSYRTHSLPMNLVSPTNQNV 61
           MLG+ TLTL              PTT+ +   LT  K+  LS RTHSLPM+LVSPTNQN 
Sbjct: 1   MLGMGTLTLSS------------PTTMVAQTTLTSSKKLILSNRTHSLPMSLVSPTNQNF 48

Query: 62  TLFSSFKEXXXXXXXXXXXXXXXDSDNLSSSD-PATKKEANKYYFVIANAKFMLDXXXXX 120
                F                  SDN+ SSD PATK E  KYYF++ANAKFMLD     
Sbjct: 49  KKHKPF----------ITAVSSVQSDNVGSSDAPATKSEFTKYYFIVANAKFMLDDEEHF 98

Query: 121 XXXXXXXXXXXXXXKMEQDFWLVIEPKFLDRFPGITKRLGRPAVALVSTNGPWITYMKLR 180
                           EQD+WLVIEPKFLD FP  TK+L RPAVALVSTNGPWIT+MKLR
Sbjct: 99  QEQLFERQRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLR 158

Query: 181 LDRVLXXXXXXXXXXXXXXXNPTNLDFGKPDKWVAPYPKYESGWWETFLLPAQKEV 236
           LDRVL               NPT L+F KP KWVAPYPKYESGWWETFL   QKEV
Sbjct: 159 LDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEV 214