Miyakogusa Predicted Gene

Lj0g3v0054409.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054409.1 Non Characterized Hit- tr|I1Q829|I1Q829_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,34.29,0.00000000000007, ,CUFF.2434.1
         (330 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g048210.1 | outer arm dynein light chain 1 | HC | chr2:212...   620   e-178
Medtr8g464200.1 | outer arm dynein light chain 1 | LC | chr8:226...   274   8e-74

>Medtr2g048210.1 | outer arm dynein light chain 1 | HC |
            chr2:21236166-21209346 | 20130731
          Length = 1660

 Score =  620 bits (1600), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/330 (91%), Positives = 318/330 (96%), Gaps = 2/330 (0%)

Query: 1    MIALTGKAVEGDILTAVEVIPNSEIQQHVWSKYKKDIRYQWFISSEVGDNFTYDPLPNQS 60
            M+ALTGKAVEGDILTAVEVIPNSE+Q+HVWSKYKKDIRYQWF SSE GD+ +Y+PLPNQ+
Sbjct: 1333 MLALTGKAVEGDILTAVEVIPNSEMQKHVWSKYKKDIRYQWFCSSEEGDSSSYEPLPNQN 1392

Query: 61   SCSYRVRLEEIGRCLKCECVVTDVFGRLGEVVYIETAPVLPGIPRVHKLEIEGRGFHTNL 120
            SCSYRV+LE+IGRCLKCECVVTDVF R GEVVYIET PVLPGIPR+HKLEIEGRGFHTNL
Sbjct: 1393 SCSYRVKLEDIGRCLKCECVVTDVFRRSGEVVYIETTPVLPGIPRIHKLEIEGRGFHTNL 1452

Query: 121  YAVRGIYSGGKEGKSRIQWLRSMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPVRE 180
            YAVRGIYSGGKEGKSR+QWLRSMVGSPDLISIPGET +MYEANVDDVGYRLVAIYTPVRE
Sbjct: 1453 YAVRGIYSGGKEGKSRVQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVAIYTPVRE 1512

Query: 181  DGVEGQSTSVSTDPIAVEPDVLKEVKQHLDLGSVKFEVLCDKDQGSKKISSVGTYERRIL 240
            DGVEGQS SVSTDPIAVEPDVLKEVKQ+LDLGSVKFEVLCDKDQ  KKISSVGTYERRIL
Sbjct: 1513 DGVEGQSVSVSTDPIAVEPDVLKEVKQNLDLGSVKFEVLCDKDQ--KKISSVGTYERRIL 1570

Query: 241  EINRKRLKVVKPATKTSFPNTEIRGSYAPPFHVELFRNDQHRLKIVVDSENEADLMVHSR 300
            EIN+KR+KVVKPATKTSFP TEIRGSY+PPFHVELFRNDQHRLKIVVDSENEADLMV SR
Sbjct: 1571 EINKKRVKVVKPATKTSFPTTEIRGSYSPPFHVELFRNDQHRLKIVVDSENEADLMVQSR 1630

Query: 301  HLRDVIVLVIRGLAQRFNSTSLNSLLKIET 330
            H+RDVIVLVIRGLAQRFNSTSLNSLLKIET
Sbjct: 1631 HIRDVIVLVIRGLAQRFNSTSLNSLLKIET 1660



 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 38/228 (16%)

Query: 37  IRYQWFISSEVGDNFTYDPLPNQSSCSYRVRLEEIGRCLKCECVVTDVFGRLGEV----V 92
           ++YQWF       NF   P+P+ +   Y  +  EIG+ LK EC        +GE     +
Sbjct: 484 LKYQWFCGDVTLSNFV--PIPDATDEFYLPKHNEIGKVLKVECTPF-----VGETEYPSI 536

Query: 93  YIETAPVLPG--IPRVHKLEIEGRGFHTNLYAVRGI----YSGGKEGKSRIQWLRSMVGS 146
           +  ++ V PG  IP+V  LE+ G     ++  +RG     + GG  GK    WLR    S
Sbjct: 537 FAISSRVKPGSGIPKVVSLEVHGELLEGSI--IRGCAKVAWCGGTPGKGVASWLRRKWNS 594

Query: 147 PDLISIPGETSKMYEANVDDVGYRLVAIYTPVREDGVEGQSTSVSTDPIAVEPDVLKEVK 206
             ++ I G     Y+  ++DV   LV +YTPV E+G +G+     TD +   P  +  V+
Sbjct: 595 SPVV-IVGAEEDEYQPTINDVDSSLVFMYTPVTEEGAKGEPQYKYTDFVRAAPPSVSNVR 653

Query: 207 QHLDL-----------------GSVKFEVL-CDKDQGSKKISSVGTYE 236
              D                  G  KFE L  ++D G   + S GT E
Sbjct: 654 IVGDAVEGITIKGVGDYFGGREGPSKFEWLRKNRDTGDFMLVSAGTSE 701



 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)

Query: 2    IALTGKAVEGDILTAVEVIPNSEIQQHVWSKYKKDIRYQWFISSEVGDNFTYDPLPNQSS 61
            + + G AVEG  L          I++  W   + D  Y+W  +S  G       +   ++
Sbjct: 946  LHIVGNAVEGTTL---------RIEKTYWGGEEGDSVYRWLRTSCDG---VQSEIMGATT 993

Query: 62   CSYRVRLEEIGR--CLKCECVVTDVFGRLGEVVYIETAPVLPGIPRVHKLEIEGRGFHTN 119
             SY   +++IG    + CE V +D + R   V+  +  P++PG P  H LEI G      
Sbjct: 994  ASYMPSIDDIGFYISVSCEPVRSD-WARGPIVLSEQIGPIIPGPPTCHSLEICGSMIEGQ 1052

Query: 120  LYAVRGIYSGGKEGKSRIQWLR-SMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPV 178
                  +Y+GG+ G    +W R    G  + IS    +    +  +DDVG  +  +YTPV
Sbjct: 1053 RLNFNAVYTGGERGDCTHEWFRVQNNGVRNKIS----SQDFLDLTLDDVGACIELVYTPV 1108

Query: 179  REDGVEGQSTSVSTDPIA 196
             +DG +G   +V +D I+
Sbjct: 1109 CKDGTKGIPKNVVSDVIS 1126



 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 39   YQWFISSEVGDNFTYDPLPNQSSC-SYRVRLEEIGRCLKCECVVTDVFGRLG-EVVYIET 96
            Y W+I    GD  +  P+P  S    Y +  E IG+ +   C      G +G E + +  
Sbjct: 876  YSWYIHEVEGDFGS--PIPGVSGLLQYHITKEVIGKFISFHCTPVRDDGVVGDERICMGQ 933

Query: 97   APVLPGIPRVHKLEIEGRGFHTNLYAVRGIYSGGKEGKSRIQWLRSMVGSPDLIS--IPG 154
              + PG PR+  L I G         +   Y GG+EG S  +WLR+   S D +   I G
Sbjct: 934  ERIRPGSPRLLSLHIVGNAVEGTTLRIEKTYWGGEEGDSVYRWLRT---SCDGVQSEIMG 990

Query: 155  ETSKMYEANVDDVGYRLVAIYTPVREDGVEG 185
             T+  Y  ++DD+G+ +     PVR D   G
Sbjct: 991  ATTASYMPSIDDIGFYISVSCEPVRSDWARG 1021



 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 7/160 (4%)

Query: 38  RYQWFISSEVGDNFTYDPLPNQSSCSYRVRLEEIGRCLKCECVVTDVFGRLGEVVYIETA 97
           +++W   +    +F    L +  +  Y +  E++G CL    +  +  G+ G+ +   + 
Sbjct: 679 KFEWLRKNRDTGDFM---LVSAGTSEYTLTKEDVGCCLTFVYIPINFEGQEGKSLSAVSP 735

Query: 98  PVLPGIPRVHKLEIEGRGFHTNLYAVRGIYSGGKEGKSRIQWLRSMVGSPDLISIPG--- 154
            V    P+V  ++I G           GI +GG EG SR+QW ++   + D  ++     
Sbjct: 736 VVKQAPPKVTNVKIIGDVRENGKVTATGIVTGGTEGSSRVQWYKTYSSTLDESNLEALST 795

Query: 155 -ETSKMYEANVDDVGYRLVAIYTPVREDGVEGQSTSVSTD 193
            + +K +   +  VG  +VA YTP+  DG  G+ST V TD
Sbjct: 796 SKVAKAFRIPLGAVGCYIVAKYTPMSPDGDSGESTFVITD 835



 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 5/178 (2%)

Query: 86  GRLGEVVYIETAPVLPGIPRVHKLEIEGRGFHTNLYAVRGIYSGGKEGKSRIQWLRSMVG 145
           G  GE  Y  T  V    P V  + I G           G Y GG+EG S+ +WLR    
Sbjct: 629 GAKGEPQYKYTDFVRAAPPSVSNVRIVGDAVEGITIKGVGDYFGGREGPSKFEWLRKNRD 688

Query: 146 SPDLISIPGETSKMYEANVDDVGYRLVAIYTPVREDGVEGQSTSVSTDPIAVEPDVLKEV 205
           + D + +   TS+ Y    +DVG  L  +Y P+  +G EG+S S  +  +   P  +  V
Sbjct: 689 TGDFMLVSAGTSE-YTLTKEDVGCCLTFVYIPINFEGQEGKSLSAVSPVVKQAPPKVTNV 747

Query: 206 KQHLDL---GSVKFE-VLCDKDQGSKKISSVGTYERRILEINRKRLKVVKPATKTSFP 259
           K   D+   G V    ++    +GS ++    TY   + E N + L   K A     P
Sbjct: 748 KIIGDVRENGKVTATGIVTGGTEGSSRVQWYKTYSSTLDESNLEALSTSKVAKAFRIP 805



 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 63   SYRVRLEEIGRCLKCECVVTDVFGRLGE-VVYIETAPVLPGIPRVHKLEIEGRGFHTNLY 121
            +Y+  L+++G  L    V T      GE +V I +  V PG P V  + +  +     +Y
Sbjct: 1193 TYKPTLKDVGSFLALYWVPTRADNACGEPLVAICSTTVSPGPPVVANVRV--KELSLGVY 1250

Query: 122  AVRGIYSGGKEGKSRIQWLR-SMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPVRE 180
            +  G Y GG EG+S + W R +  GS + ++  G  S+ YE    D   RL+  YTPVR 
Sbjct: 1251 SGEGEYFGGYEGESILSWHRENSEGSVEPVN--GANSRTYEVTDSDYTCRLLFGYTPVRS 1308

Query: 181  DGVEGQ 186
            D V G+
Sbjct: 1309 DSVVGE 1314


>Medtr8g464200.1 | outer arm dynein light chain 1 | LC |
           chr8:22676140-22682943 | 20130731
          Length = 656

 Score =  274 bits (701), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 146/294 (49%), Positives = 190/294 (64%), Gaps = 22/294 (7%)

Query: 2   IALTGKAVEGDILTAVEVIPNSEIQQHVWSKYKKDIRYQWFISSEVGDNFTYDPLPNQSS 61
           + +TG A EG  +  V            +  ++   +++W    + GD      +   ++
Sbjct: 363 VRITGDAFEGMTINGV---------GDYFGGWEGHSKFEWLRHKDTGDRLL---VSAGTT 410

Query: 62  CSYRVRLEEIGRCLKCECVVTDVFGRLGEVVYIETAPVLPGIPRVHKLEIEGRGFHTNLY 121
             Y +  E++G CL       +  G+ G   +    PV+ GIPRVH L+IEG+GFHT++Y
Sbjct: 411 SDYTLTEEDVGCCLTFAYTPINSEGQEGIKAFSAVFPVVQGIPRVHNLKIEGKGFHTSVY 470

Query: 122 AVRGIYSGGKEGKSRIQWLRSMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPVRED 181
            V GIYSGGK+GK RIQW RSM G PD+I IPGET  +YEANV DVGY+LVA+YTP+RED
Sbjct: 471 YVDGIYSGGKQGKKRIQWFRSMEGRPDMI-IPGETCIVYEANVGDVGYKLVAVYTPIRED 529

Query: 182 GVEGQSTSVSTDPIAVEPDVLKEVKQHLDLGSVKFEVLCDKDQGSKKISSVGTYERRILE 241
           GVEGQS SVSTDPIAVEPD+LK+V   +D GSVKFEV CD+ Q S+K       ++RIL+
Sbjct: 530 GVEGQSVSVSTDPIAVEPDILKKVNCIVDRGSVKFEVACDRGQTSEK------RQKRILD 583

Query: 242 INRKRLKVVKPATKTSFPNTEIRGSYAPPFHVELFRNDQHRLKIVVDSENEADL 295
           INRKR+K+VKPA    FP TE R SY P  HV+LF ND +RLKI V+ ENE + 
Sbjct: 584 INRKRVKMVKPAF---FPTTEFRASYGPTLHVKLFENDGYRLKIAVEGENETEF 634



 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 77/196 (39%), Gaps = 16/196 (8%)

Query: 2   IALTGKAVEGDILTAVEVIPNSEIQQHV--WSKYKKDIRYQWFISSEVGDNFTYDPLPNQ 59
           + + G A+EG I+  V      E       WS+   +   + F+S   G ++T       
Sbjct: 267 VEIVGDAIEGTIIKGVGDYFGGEEGNSTFEWSRKNMETNGEGFMSVSSGTHYT------- 319

Query: 60  SSCSYRVRLEEIGRCLKCECVVTDVFGRLGEVVYIETAPVLPGIPRVHKLEIEGRGFHTN 119
                 +  E++G CL       +  GR G+     +  V    P V  + I G  F   
Sbjct: 320 ------LTKEDVGCCLTFSYTPINSEGRRGKKKSAVSPVVKQASPSVSNVRITGDAFEGM 373

Query: 120 LYAVRGIYSGGKEGKSRIQWLRSMVGSPDLISIPGETSKMYEANVDDVGYRLVAIYTPVR 179
                G Y GG EG S+ +WLR       L+   G TS  Y    +DVG  L   YTP+ 
Sbjct: 374 TINGVGDYFGGWEGHSKFEWLRHKDTGDRLLVSAGTTSD-YTLTEEDVGCCLTFAYTPIN 432

Query: 180 EDGVEGQSTSVSTDPI 195
            +G EG     +  P+
Sbjct: 433 SEGQEGIKAFSAVFPV 448