Miyakogusa Predicted Gene

Lj0g3v0054359.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054359.2 Non Characterized Hit- tr|Q9T0C2|Q9T0C2_ARATH
Putative uncharacterized protein AT4g10650
OS=Arabidop,46.43,1e-16,GTP-BINDING PROTEIN-RELATED,NULL; no
description,NULL,CUFF.2424.2
         (134 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g061470.1 | P-loop nucleoside triphosphate hydrolase super...   135   1e-32
Medtr7g091320.1 | P-loop nucleoside triphosphate hydrolase super...    68   2e-12
Medtr7g091320.3 | P-loop nucleoside triphosphate hydrolase super...    68   2e-12
Medtr7g091320.2 | P-loop nucleoside triphosphate hydrolase super...    68   3e-12
Medtr7g094890.1 | ribosome biogenesis GTPase A | HC | chr7:37900...    53   6e-08

>Medtr2g061470.1 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr2:26052534-26057259 |
           20130731
          Length = 375

 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 81/120 (67%), Gaps = 10/120 (8%)

Query: 3   AASHLGRRIGTALKEMIGSKK-----RAPWHDSLMAAASTAIVERIPLVDIIVHVRDARI 57
           A +  GRR+G  +KE I  +K        W+D  M A++ AI ERIPLVD+IVHV DARI
Sbjct: 2   ATTQFGRRVGRIVKERIERRKSSVIREGLWNDPFMVASTRAIAERIPLVDLIVHVTDARI 61

Query: 58  PSSSECHLLKNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENNCISCGVNAHNKESIRK 117
           P SS+CHLL     +   II LNK+DLA  S LQ W +YF E NC+SCGV+AHNKESIR+
Sbjct: 62  PFSSQCHLL-----THNHIIVLNKADLASRSSLQVWMDYFRETNCVSCGVDAHNKESIRQ 116


>Medtr7g091320.1 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr7:36058142-36064108 |
           20130731
          Length = 373

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L+   S  ++++ALNK DLA 
Sbjct: 26  WFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKRRVVALNKKDLAN 85

Query: 87  SSGLQAWTEYFA--ENNCISCGVNAHNKESI 115
            + +  W  YF   + +CI   +NAH+K S+
Sbjct: 86  PNIMHKWVNYFESCKQDCIP--INAHSKSSV 114


>Medtr7g091320.3 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr7:36058214-36064108 |
           20130731
          Length = 373

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L+   S  ++++ALNK DLA 
Sbjct: 26  WFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKRRVVALNKKDLAN 85

Query: 87  SSGLQAWTEYFA--ENNCISCGVNAHNKESI 115
            + +  W  YF   + +CI   +NAH+K S+
Sbjct: 86  PNIMHKWVNYFESCKQDCIP--INAHSKSSV 114


>Medtr7g091320.2 | P-loop nucleoside triphosphate hydrolase
           superfamily protein | HC | chr7:36058204-36063524 |
           20130731
          Length = 299

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 4/91 (4%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    MAAA+ AI  R+ L D+++ VRDARIP SS    L+   S  ++++ALNK DLA 
Sbjct: 26  WFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKRRVVALNKKDLAN 85

Query: 87  SSGLQAWTEYFA--ENNCISCGVNAHNKESI 115
            + +  W  YF   + +CI   +NAH+K S+
Sbjct: 86  PNIMHKWVNYFESCKQDCIP--INAHSKSSV 114


>Medtr7g094890.1 | ribosome biogenesis GTPase A | HC |
           chr7:37900080-37894545 | 20130731
          Length = 373

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 41/75 (54%)

Query: 27  WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 86
           W    +A A   + E++ L+D+++ VRD RIP S+    +     + K+I+ LN+ D+  
Sbjct: 99  WFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTSHPQMDLWLGNKKRILVLNREDMIS 158

Query: 87  SSGLQAWTEYFAENN 101
           ++   AW EYF  + 
Sbjct: 159 TADRNAWAEYFTRHG 173