Miyakogusa Predicted Gene
- Lj0g3v0054359.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0054359.1 Non Characterized Hit- tr|D7U731|D7U731_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,60.68,0,P-loop
containing nucleoside triphosphate hydrolases,NULL; seg,NULL;
GTP-BINDING PROTEIN-RELATED,NUL,CUFF.2424.1
(298 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g061470.1 | P-loop nucleoside triphosphate hydrolase super... 338 3e-93
Medtr7g091320.1 | P-loop nucleoside triphosphate hydrolase super... 152 5e-37
Medtr7g091320.3 | P-loop nucleoside triphosphate hydrolase super... 152 5e-37
Medtr7g091320.2 | P-loop nucleoside triphosphate hydrolase super... 151 6e-37
Medtr7g094890.1 | ribosome biogenesis GTPase A | HC | chr7:37900... 83 3e-16
Medtr1g048030.1 | guanine nucleotide-binding-like protein | HC |... 55 7e-08
Medtr4g081850.1 | nucleolar GTP-binding-like protein | HC | chr4... 52 5e-07
Medtr2g079510.1 | nucleolar GTP-binding-like protein | HC | chr2... 51 1e-06
>Medtr2g061470.1 | P-loop nucleoside triphosphate hydrolase
superfamily protein | HC | chr2:26052534-26057259 |
20130731
Length = 375
Score = 338 bits (868), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 168/242 (69%), Positives = 191/242 (78%), Gaps = 11/242 (4%)
Query: 63 AASHLGRRIGTALKEMIGSKKRAP-----WHDSLMAAASTAIVERIPLVDIIVHVRDARI 117
A + GRR+G +KE I +K + W+D M A++ AI ERIPLVD+IVHV DARI
Sbjct: 2 ATTQFGRRVGRIVKERIERRKSSVIREGLWNDPFMVASTRAIAERIPLVDLIVHVTDARI 61
Query: 118 PSSSECHLLKNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENNCISCGVNAHNKESIRK 177
P SS+CHLL + II LNK+DLA S LQ W +YF E NC+SCGV+AHNKESIR+
Sbjct: 62 PFSSQCHLL-----THNHIIVLNKADLASRSSLQVWMDYFRETNCVSCGVDAHNKESIRQ 116
Query: 178 FLTLIQGQVRKLGRTDHAN-YTATVMLIGIPNVGKSALVNALHQVGRISAAEKGKLKHAT 236
FL+LIQ QV KL RTD AN YTATVMLIG+PNVGKSAL NALH VGRISAAEKGKLKHAT
Sbjct: 117 FLSLIQRQVGKLRRTDQANKYTATVMLIGLPNVGKSALTNALHHVGRISAAEKGKLKHAT 176
Query: 237 VSPEPGETKDIRSFKIGSHPNIYVLDTPAVLSPEVPDVDVISKLILTGAIGDCFVGIKEI 296
VSPEPGETKDIRS+KI SHPNIYVLDTPAVL PEVPDVDV+SKL+LTGAIGDC + KE
Sbjct: 177 VSPEPGETKDIRSYKIASHPNIYVLDTPAVLPPEVPDVDVLSKLLLTGAIGDCLIERKET 236
Query: 297 AQ 298
A+
Sbjct: 237 AE 238
>Medtr7g091320.1 | P-loop nucleoside triphosphate hydrolase
superfamily protein | HC | chr7:36058142-36064108 |
20130731
Length = 373
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 132/214 (61%), Gaps = 7/214 (3%)
Query: 87 WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 146
W MAAA+ AI R+ L D+++ VRDARIP SS L+ S ++++ALNK DLA
Sbjct: 26 WFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKRRVVALNKKDLAN 85
Query: 147 SSGLQAWTEYFA--ENNCISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLI 204
+ + W YF + +CI +NAH+K S+ K L L++ ++++ + T VM++
Sbjct: 86 PNIMHKWVNYFESCKQDCIP--INAHSKSSVTKLLELVELKLKEAISKEP---TLLVMVV 140
Query: 205 GIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIYVLDTP 264
G+PNVGKS L+N++HQ+ + K+K A V P PG T+DI FKI + P+IYVLDTP
Sbjct: 141 GVPNVGKSCLINSIHQIAHSRFPVQEKMKRAAVGPLPGVTQDIAGFKIANKPSIYVLDTP 200
Query: 265 AVLSPEVPDVDVISKLILTGAIGDCFVGIKEIAQ 298
VL P + D++ KL L G++ D VG + IAQ
Sbjct: 201 GVLVPSISDIETGLKLALAGSVKDSVVGEERIAQ 234
>Medtr7g091320.3 | P-loop nucleoside triphosphate hydrolase
superfamily protein | HC | chr7:36058214-36064108 |
20130731
Length = 373
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 132/214 (61%), Gaps = 7/214 (3%)
Query: 87 WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 146
W MAAA+ AI R+ L D+++ VRDARIP SS L+ S ++++ALNK DLA
Sbjct: 26 WFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKRRVVALNKKDLAN 85
Query: 147 SSGLQAWTEYFA--ENNCISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLI 204
+ + W YF + +CI +NAH+K S+ K L L++ ++++ + T VM++
Sbjct: 86 PNIMHKWVNYFESCKQDCIP--INAHSKSSVTKLLELVELKLKEAISKEP---TLLVMVV 140
Query: 205 GIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIYVLDTP 264
G+PNVGKS L+N++HQ+ + K+K A V P PG T+DI FKI + P+IYVLDTP
Sbjct: 141 GVPNVGKSCLINSIHQIAHSRFPVQEKMKRAAVGPLPGVTQDIAGFKIANKPSIYVLDTP 200
Query: 265 AVLSPEVPDVDVISKLILTGAIGDCFVGIKEIAQ 298
VL P + D++ KL L G++ D VG + IAQ
Sbjct: 201 GVLVPSISDIETGLKLALAGSVKDSVVGEERIAQ 234
>Medtr7g091320.2 | P-loop nucleoside triphosphate hydrolase
superfamily protein | HC | chr7:36058204-36063524 |
20130731
Length = 299
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 132/214 (61%), Gaps = 7/214 (3%)
Query: 87 WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 146
W MAAA+ AI R+ L D+++ VRDARIP SS L+ S ++++ALNK DLA
Sbjct: 26 WFPGHMAAATRAIRNRLKLADLVIEVRDARIPISSINSDLQPHLSLKRRVVALNKKDLAN 85
Query: 147 SSGLQAWTEYFA--ENNCISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLI 204
+ + W YF + +CI +NAH+K S+ K L L++ ++++ + T VM++
Sbjct: 86 PNIMHKWVNYFESCKQDCIP--INAHSKSSVTKLLELVELKLKEAISKEP---TLLVMVV 140
Query: 205 GIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNIYVLDTP 264
G+PNVGKS L+N++HQ+ + K+K A V P PG T+DI FKI + P+IYVLDTP
Sbjct: 141 GVPNVGKSCLINSIHQIAHSRFPVQEKMKRAAVGPLPGVTQDIAGFKIANKPSIYVLDTP 200
Query: 265 AVLSPEVPDVDVISKLILTGAIGDCFVGIKEIAQ 298
VL P + D++ KL L G++ D VG + IAQ
Sbjct: 201 GVLVPSISDIETGLKLALAGSVKDSVVGEERIAQ 234
>Medtr7g094890.1 | ribosome biogenesis GTPase A | HC |
chr7:37900080-37894545 | 20130731
Length = 373
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 87 WHDSLMAAASTAIVERIPLVDIIVHVRDARIPSSSECHLLKNCPSSSKQIIALNKSDLAC 146
W +A A + E++ L+D+++ VRD RIP S+ + + K+I+ LN+ D+
Sbjct: 99 WFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPLSTSHPQMDLWLGNKKRILVLNREDMIS 158
Query: 147 SSGLQAWTEYFAENNCISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVML--- 203
++ AW EYF + N K L ++L + A +L
Sbjct: 159 TADRNAWAEYFTRHGTKVVFSNGQLGMGTLKLCRL----AKELAADVNVKRRAKGLLPRP 214
Query: 204 -----IGIPNVGKSALVNALHQVGRISAAEKGKLKHATVSPEPGETKDIRSFKIGSHPNI 258
+G PNVGKS+L+N L K + +P PG T+D+R + G ++
Sbjct: 215 VRAGIVGYPNVGKSSLINRLL-----------KRRMCPAAPRPGVTRDLRWVRFGK--DL 261
Query: 259 YVLDTPAVLSPEVPDVDVISKLILTGAIGDCFVGIKEIA 297
+LD+P +L + D KL + IG+ + ++A
Sbjct: 262 ELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVA 300
>Medtr1g048030.1 | guanine nucleotide-binding-like protein | HC |
chr1:18178595-18172713 | 20130731
Length = 599
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 37/184 (20%)
Query: 107 DIIVHVRDARIPSSSEC----HLLKNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENN- 161
D+I+ V DAR P + C +++ + + ++ LNK DL ++ W +Y E
Sbjct: 144 DVILEVLDARDPLGTRCVNIEKRVRDSGTYKRHVLLLNKIDLVPRESVEKWLKYLREEFP 203
Query: 162 --CISCGV-----NAHNKESIRKFLTL----------IQGQVRKLGRTDHANYTATVMLI 204
C N + I+ TL + ++ R+D + TV L+
Sbjct: 204 TVAFKCSTQQQKSNLGRSKKIKTSNTLQLSDCLGAETLLKLLKNYARSDKLKTSITVGLV 263
Query: 205 GIPNVGKSALVNALHQVGRISAAEKGKLKHAT-VSPEPGETKDIRSFKIGSHPNIYVLDT 263
G+PNVGKS+L+N+L + HA VS G T+ + ++ N+ +LD
Sbjct: 264 GLPNVGKSSLINSLMR------------SHAVHVSASAGSTRSKQEIRLDK--NVKLLDC 309
Query: 264 PAVL 267
P V+
Sbjct: 310 PGVV 313
>Medtr4g081850.1 | nucleolar GTP-binding-like protein | HC |
chr4:31881653-31883769 | 20130731
Length = 563
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 24/167 (14%)
Query: 107 DIIVHVRDARIPSSSEC-----HLLKNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENN 161
D++V V DAR P + C HL +NC ++ LNK DL + + W ++
Sbjct: 207 DVVVQVIDARDPQGTRCYHLEKHLKENC-KHKHMVLLLNKCDLIPAWATKGWLRVLSKEY 265
Query: 162 CISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLIGIPNVGKSALVNALHQV 221
+ NK + L I +R+ R +V +G PNVGKS+++N L
Sbjct: 266 PTLAFHASINKSFGKGSLLSI---LRQFARLKSDKQAISVGFVGYPNVGKSSVINTL--- 319
Query: 222 GRISAAEKGKLKHA-TVSPEPGETKDIRSFKIGSHPNIYVLDTPAVL 267
+ K+ V+P PGETK + + I+++D P V+
Sbjct: 320 ---------RTKNVCKVAPIPGETKVWQYITLTKR--IFLIDCPGVV 355
>Medtr2g079510.1 | nucleolar GTP-binding-like protein | HC |
chr2:33482137-33476593 | 20130731
Length = 574
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 107 DIIVHVRDARIPSSSEC-----HLLKNCPSSSKQIIALNKSDLACSSGLQAWTEYFAENN 161
D++V V DAR P + C HL +NC ++ LNK DL + + W ++
Sbjct: 215 DVVVQVIDARDPQGTRCYHLEKHLKENC-KHKHMVLLLNKCDLIPAWATKGWLRVLSKEY 273
Query: 162 CISCGVNAHNKESIRKFLTLIQGQVRKLGRTDHANYTATVMLIGIPNVGKSALVNALHQV 221
+ NK + L + +R+ R +V +G PNVGKS+++N L
Sbjct: 274 PTLAFHASINKSFGKGSLLSV---LRQFARLKSDKQAISVGFVGYPNVGKSSVINTL--- 327
Query: 222 GRISAAEKGKLKHA-TVSPEPGETKDIRSFKIGSHPNIYVLDTPAVLSPEVPDVDVISKL 280
+ K+ V+P PGETK + + I+++D P V+ + D + +
Sbjct: 328 ---------RTKNVCKVAPIPGETKVWQYITLTKR--IFLIDCPGVV---YHNNDSETDV 373
Query: 281 ILTGAI 286
+L G +
Sbjct: 374 VLKGVV 379