Miyakogusa Predicted Gene

Lj0g3v0054069.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0054069.1 tr|G7JG11|G7JG11_MEDTR Photosystem II CP43
chlorophyll apoprotein OS=Medicago truncatula
GN=MTR_4g05,99.11,0,seg,NULL; Photosystem I subunits PsaA/PsaB,NULL;
PSII,Photosystem antenna
protein-like,NODE_30987_length_718_cov_381.919220.path1.1
         (225 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0002s0420.1 | photosystem II CP43 chlorophyll apoprotein | ...   410   e-115
Medtr8g014470.1 | photosystem II CP43 chlorophyll apoprotein | H...   255   3e-68
Medtr7g016660.1 | photosystem II CP43 chlorophyll apoprotein | H...   142   3e-34

>Medtr0002s0420.1 | photosystem II CP43 chlorophyll apoprotein | HC
           | scaffold0002:208858-211288 | 20130731
          Length = 798

 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/206 (96%), Positives = 201/206 (97%)

Query: 20  VFKASYFGGIYDTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIG 79
           V KA YFGG+YDTWAPGGGDVRKITNLTLSPS+IFGYLLKSPFGGEGWIVSVDDLEDIIG
Sbjct: 501 VLKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIG 560

Query: 80  GHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVFGFIACCFVWFNNT 139
           GHVWLG IC+ GGIWHILTKPFAWARRA VWSGEAYLSYSLAALSVFGFIACCFVWFNNT
Sbjct: 561 GHVWLGFICVFGGIWHILTKPFAWARRAFVWSGEAYLSYSLAALSVFGFIACCFVWFNNT 620

Query: 140 AYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGET 199
           AYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGET
Sbjct: 621 AYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGET 680

Query: 200 MRFWDLRAPWLEPLRGPNGLDLSRLK 225
           MRFWDLRAPWLEPLRGPNGLDLSRLK
Sbjct: 681 MRFWDLRAPWLEPLRGPNGLDLSRLK 706


>Medtr8g014470.1 | photosystem II CP43 chlorophyll apoprotein | HC |
           chr8:4549105-4547570 | 20130731
          Length = 480

 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/125 (98%), Positives = 124/125 (99%)

Query: 20  VFKASYFGGIYDTWAPGGGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIG 79
           VFKASYFGGIYDTWAPGGGDVRKITNLTLSPSII GYLLKSPFGGEGWIVSVDDLEDIIG
Sbjct: 356 VFKASYFGGIYDTWAPGGGDVRKITNLTLSPSIILGYLLKSPFGGEGWIVSVDDLEDIIG 415

Query: 80  GHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVFGFIACCFVWFNNT 139
           GHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALS+FGFIACCFVWFNNT
Sbjct: 416 GHVWLGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSLFGFIACCFVWFNNT 475

Query: 140 AYPSE 144
           AYPSE
Sbjct: 476 AYPSE 480


>Medtr7g016660.1 | photosystem II CP43 chlorophyll apoprotein | HC |
           chr7:5272404-5271939 | 20130731
          Length = 122

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/78 (88%), Positives = 71/78 (91%)

Query: 119 SLAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGP 178
           S +ALSVFGFIACCFV FNNTAYPSEFYGPT PE  QAQAFTFLVRDQRLGANVGSA+GP
Sbjct: 3   SSSALSVFGFIACCFVGFNNTAYPSEFYGPTRPEVFQAQAFTFLVRDQRLGANVGSAEGP 62

Query: 179 TGLGKYLMRSPTGEVIFG 196
           TGLGKYLMRSP G VIFG
Sbjct: 63  TGLGKYLMRSPIGVVIFG 80