Miyakogusa Predicted Gene

Lj0g3v0048699.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048699.1 Non Characterized Hit- tr|I0YIK5|I0YIK5_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,40.96,0.000004,BRG-1 ASSOCIATED FACTOR 250 (BAF250),NULL;
seg,NULL,CUFF.2267.1
         (463 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g041115.1 | leaf and flower-like protein | HC | chr1:15256...   735   0.0  

>Medtr1g041115.1 | leaf and flower-like protein | HC |
           chr1:15256268-15250307 | 20130731
          Length = 460

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/463 (78%), Positives = 389/463 (84%), Gaps = 3/463 (0%)

Query: 1   MQKREQXXXXXXXXXXXXTPAKRGRPFGSGNNSXXXXXXXXXXXXXXPSTLLGPSLHVHN 60
           MQKR+Q            TPAKRGRPFGSGNNS              PSTLLGPSLHVH+
Sbjct: 1   MQKRDQGKAGGATGGGSATPAKRGRPFGSGNNSAAAAAAAADTAA--PSTLLGPSLHVHS 58

Query: 61  SFADQNNKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRRDATPLAKIPGLLDALLQV 120
           +FADQNNKRIVLALQSGLKSELTWALNTLTLLSFKEKD+MR+DATPLAKIPGLLDALLQV
Sbjct: 59  AFADQNNKRIVLALQSGLKSELTWALNTLTLLSFKEKDEMRKDATPLAKIPGLLDALLQV 118

Query: 121 IDDWRDVGLPKELVKKSRVRTLGVNSVATGFGNQYQALSSTATLHRPGLGSASAGTESTQ 180
           IDDWRD+ LPKELV+ +RVR+LGVNSVATGFGN+YQAL ST TL RP LGS +A TES Q
Sbjct: 119 IDDWRDIALPKELVRTTRVRSLGVNSVATGFGNEYQALGSTGTLQRPSLGSGTASTESAQ 178

Query: 181 QSGGATKSRFSELWFDEDGLFNLDDEGRAEKQQCAVAASNIIRNFSFMPDNELIMAQHRH 240
           Q+G A K RFSEL FDEDGLFNLDDEGRAEKQQCAVAASNIIRNFSFMPDNE+IMAQ+RH
Sbjct: 179 QNGTA-KPRFSELRFDEDGLFNLDDEGRAEKQQCAVAASNIIRNFSFMPDNEVIMAQNRH 237

Query: 241 CLETAFQCIEDHIIEDEELVTNALETIVNLAPLLDLRXXXXXXXXXXXXTEKRAVLAIMG 300
           C+ETAFQCIEDHI+EDEELVTNA+ETIVNLAPLLDLR            TEKRAV AI+G
Sbjct: 238 CMETAFQCIEDHIVEDEELVTNAIETIVNLAPLLDLRIFSSSKPSFIKITEKRAVQAIIG 297

Query: 301 MLESTVKAWHCAAAELLGRLIINPDNEPFLLPFFPQIHKRLVDLISXXXXXXXXXXXXXX 360
           +L S VKAWHCAAAELLGRLIINPDNEPFLLPFFP+I+K L+DLIS              
Sbjct: 298 ILNSPVKAWHCAAAELLGRLIINPDNEPFLLPFFPKIYKHLIDLISLPATDAQAAAIGAL 357

Query: 361 YNLAEVNMDCRLKIASERWAIDRLLKVIKTPHPVPEVCRKAAMILESLVSEPQNRTLLLA 420
           YNLAEVNMDCRL IASERWAIDRLLKVIK PHPVPEVCRKAAMILESLVSEPQNRTLLL 
Sbjct: 358 YNLAEVNMDCRLGIASERWAIDRLLKVIKAPHPVPEVCRKAAMILESLVSEPQNRTLLLV 417

Query: 421 YENAFAEILFTEGRYSDTFARILYELTSRPSNKVATARGIWGM 463
           YENAFAEILFT+ +YSDTFARILYEL+SRP +KVATARGIWGM
Sbjct: 418 YENAFAEILFTDSKYSDTFARILYELSSRPGHKVATARGIWGM 460