Miyakogusa Predicted Gene

Lj0g3v0048599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048599.1 tr|F4XRB8|F4XRB8_9CYAN 50S ribosomal protein L28
OS=Moorea producens 3L GN=rpl28 PE=3 SV=1,63.01,3e-19,no
description,NULL; seg,NULL; L28: ribosomal protein L28,Ribosomal
protein L28; Ribosomal_L28,Ribos,CUFF.2259.1
         (147 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g041320.1 | 50S ribosomal protein L28 | HC | chr1:15384098...   184   2e-47

>Medtr1g041320.1 | 50S ribosomal protein L28 | HC |
           chr1:15384098-15386251 | 20130731
          Length = 146

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/149 (67%), Positives = 112/149 (75%), Gaps = 5/149 (3%)

Query: 1   MAGCAVSLANSFTFAS-RAVAVAVAPTKSSFSSTQLGFVTSQLSGLSLCCQPQPTLKLPX 59
           MAG AVSL N+F FAS R+++       SSFS  QLGF+ SQLSGL +  Q   +LKLP 
Sbjct: 1   MAGSAVSLGNTFVFASMRSISSTNTHKPSSFS-PQLGFLNSQLSGLKISSQT--SLKLPT 57

Query: 60  XXXXXX-XXXXXXXXCPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRIWWEAGKRYVKL 118
                          CPFTGKK+NRANKVSFSNHKTKKLQFVNLQYKR+WWEAGKR+VKL
Sbjct: 58  PIVASPFQPIVAKRVCPFTGKKSNRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKL 117

Query: 119 RLSTKALKTIEKNGLDAVAKKAGVDLRKK 147
           RLSTKALKTIEKNGLDAVAKKAG+DL KK
Sbjct: 118 RLSTKALKTIEKNGLDAVAKKAGIDLSKK 146