Miyakogusa Predicted Gene

Lj0g3v0048489.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048489.2 Non Characterized Hit- tr|Q7VAI6|Q7VAI6_PROMA
Uncharacterized conserved protein OS=Prochlorococcus
m,45.45,1e-18,seg,NULL,CUFF.2243.2
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g465290.1 | hypothetical protein | HC | chr6:23129744-2313...   207   5e-54

>Medtr6g465290.1 | hypothetical protein | HC |
           chr6:23129744-23131304 | 20130731
          Length = 242

 Score =  207 bits (526), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/184 (59%), Positives = 128/184 (69%), Gaps = 3/184 (1%)

Query: 1   MSCKINSLNPPIPCRFYXXXXXXXXXXXXXLCS--SDEQQKXXXXXXXXXXXXXXXYSVS 58
           MS KIN  +PPI C+F+               S  S E+Q                Y+++
Sbjct: 1   MSSKINFSSPPIQCKFHIKKSNLTRKNTIIFSSFPSSEKQNKTISKTIENPSNDKAYTIN 60

Query: 59  FKTKRACKLGISRYPDFEYDAEGGMGTGPGAKVTENQANNNDLLVSFDLETLYIPPLTSS 118
           FKTK ACKLGISRYPDF YDAEGG+GTG GAK  +N ++NND+LVSFDL+TLYIP LTSS
Sbjct: 61  FKTKSACKLGISRYPDFVYDAEGGIGTGFGAKERQN-SDNNDILVSFDLDTLYIPSLTSS 119

Query: 119 TTKFXXXXXXXXXKIDIVPQALQGSVNQESGKVDLEFKAKFLFSIGSLYKAPPLLVKTVL 178
           TTKF         +IDIVP+A QGS+NQESGKVDLEFKAKFLFS GS+YKAPPLLVKTVL
Sbjct: 120 TTKFLGLSLPPFLRIDIVPEAFQGSINQESGKVDLEFKAKFLFSAGSIYKAPPLLVKTVL 179

Query: 179 TTEE 182
           T+EE
Sbjct: 180 TSEE 183