Miyakogusa Predicted Gene

Lj0g3v0048129.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0048129.1 CUFF.2302.1
         (720 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g023320.1 | soluble starch synthase III-1 | HC | chr2:8219...   787   0.0  
Medtr2g023320.2 | soluble starch synthase III-1 | HC | chr2:8219...   711   0.0  
Medtr2g036080.1 | PPR containing plant-like protein | HC | chr2:...   109   1e-23

>Medtr2g023320.1 | soluble starch synthase III-1 | HC |
           chr2:8219703-8232653 | 20130731
          Length = 1109

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/729 (58%), Positives = 479/729 (65%), Gaps = 84/729 (11%)

Query: 1   MEMS-SLPLNLKTTFPDRGGGCLKLTPFSGFYLRHPVTTAAGYQSSGCKAGWGGFCVKAS 59
           ME+S SL  + KT FP+R   C   TP                 SS CK      CV AS
Sbjct: 1   MEISLSLQFSCKTVFPNRST-CFNRTP-----------------SSWCKPSTKLSCVNAS 42

Query: 60  SADFSRRRQQKKVSIARPKDSAPKGFAPKSPVRXXXXXXXXXXXXXXXGDSLTPTVSEIP 119
           S DFSR+RQQKK S+A+ K S+PKGF PKS +                            
Sbjct: 43  S-DFSRKRQQKKGSVAKSKGSSPKGFVPKSSIGSSSKKNARVKK---------------- 85

Query: 120 GDGNKQTLDVNTDNDNQG--------------VTSNRGEEIGDVSTTDEDVIVLKSR--- 162
               +QTLDVN D+D  G               T+    E G  S +DE + V+++    
Sbjct: 86  ---GEQTLDVNVDDDKDGEVEFSLEEKHAIVDKTNEIVREFGQTSLSDETLDVVETNRGE 142

Query: 163 ----------EGISYNGDVGIVNESEERTLDYAEIDENVQVKSEETSTASDDRISEEASR 212
                     EG SY GD G V +S+E                   S A+DDRI+EEASR
Sbjct: 143 EDVDDDLLHGEGTSYIGDDGYVKDSQE------------------ASPATDDRINEEASR 184

Query: 213 RLKLELEQNLRRQEIERIAEENLSQGTKMFVYPPVVKPDQDIEVYLNKSLSTLSDEPDIL 272
            LKL+LE+NLR+Q+IERIA+EN  +G +MFVYPPVVKPDQDIEV+LNK+LSTL DE DIL
Sbjct: 185 MLKLKLEENLRKQKIERIADENFLRGKQMFVYPPVVKPDQDIEVFLNKNLSTLRDEEDIL 244

Query: 273 IMGAFNDWRWKSFTLRMNRTHLKGDWWFCELHVHKEAYKLDFVFFNGQDVYDNNDGKDFC 332
           I+GAFNDWRWKSFT+R+N+T LK +WW C+L+V  EAYKLDFVFFNGQ VYDNND KDFC
Sbjct: 245 ILGAFNDWRWKSFTIRLNKTDLKDNWWSCQLYVPIEAYKLDFVFFNGQSVYDNNDQKDFC 304

Query: 333 IPVEGGMDALAFDDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSQARV 392
           I V+GGMDALAF++F                                      DR QAR+
Sbjct: 305 ITVDGGMDALAFEEFLLEEKRKELEKLAKEQAERERQAEEERRIEADKAAKEEDRLQARL 364

Query: 393 EVETKRETLLPHVKKAVKSVDNVWCIEPTEFKGKDLVRLYYKGGSGPLAQAKEIWIHGGY 452
           EVE ++ET+L  +K AVKS D+VW IEP EFKGKDLVRLYY G SGPL  AKEIWIHGGY
Sbjct: 365 EVERRQETVLQLMKNAVKSNDSVWYIEPGEFKGKDLVRLYYNGSSGPLEHAKEIWIHGGY 424

Query: 453 NNWKDGLSIVERLVKSVLKGGDWWYADVVVPDRALVLDWVFADGPPQNAVVYDNNQLQDF 512
           NNWKDGLSIVERLVKS LKGG WWYADVVVPD+ALVLDWVFADGPPQNA VYDNN   DF
Sbjct: 425 NNWKDGLSIVERLVKSGLKGGAWWYADVVVPDQALVLDWVFADGPPQNAAVYDNNHKLDF 484

Query: 513 HAIVPIAPLDEQYWAEEEQLIYRKLQEDRKLRXXXXXXXXXXXXXXXXXXXXXXXXXFLL 572
           HAIVP+A  D QYW EEEQLIY+KL+E+RKLR                         FLL
Sbjct: 485 HAIVPLATPDAQYWVEEEQLIYQKLREERKLREEAIRVKAEKTARMKAETKEKTLKSFLL 544

Query: 573 SQKHIVFTEPLDVQAGSIVTVFYNPSNTNLKGKPEVWFRCSFNRWSHRIGPLPPQRMLPA 632
           SQKHIVFTEPLD+QAGS VTVFYNPSNTNL GKPEVWFR SFNRWSHR GP PPQRMLPA
Sbjct: 545 SQKHIVFTEPLDIQAGSTVTVFYNPSNTNLNGKPEVWFRGSFNRWSHRNGPFPPQRMLPA 604

Query: 633 DNGTHVKACVKVPLDAYMMDFVFSESESGGVFDNKFGMDYHIPVFGGIVKEPPLHITHIA 692
           +NGTHVK  VKVPLDAYMMDFVFSESE+GGVFDNKFGMDYHIPVFG IVKEPPLHI HIA
Sbjct: 605 ENGTHVKTSVKVPLDAYMMDFVFSESENGGVFDNKFGMDYHIPVFGSIVKEPPLHIIHIA 664

Query: 693 VEMAPIAKC 701
           VEMAPIAK 
Sbjct: 665 VEMAPIAKV 673


>Medtr2g023320.2 | soluble starch synthase III-1 | HC |
           chr2:8219703-8232653 | 20130731
          Length = 925

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/488 (71%), Positives = 380/488 (77%)

Query: 214 LKLELEQNLRRQEIERIAEENLSQGTKMFVYPPVVKPDQDIEVYLNKSLSTLSDEPDILI 273
           LKL+LE+NLR+Q+IERIA+EN  +G +MFVYPPVVKPDQDIEV+LNK+LSTL DE DILI
Sbjct: 2   LKLKLEENLRKQKIERIADENFLRGKQMFVYPPVVKPDQDIEVFLNKNLSTLRDEEDILI 61

Query: 274 MGAFNDWRWKSFTLRMNRTHLKGDWWFCELHVHKEAYKLDFVFFNGQDVYDNNDGKDFCI 333
           +GAFNDWRWKSFT+R+N+T LK +WW C+L+V  EAYKLDFVFFNGQ VYDNND KDFCI
Sbjct: 62  LGAFNDWRWKSFTIRLNKTDLKDNWWSCQLYVPIEAYKLDFVFFNGQSVYDNNDQKDFCI 121

Query: 334 PVEGGMDALAFDDFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRSQARVE 393
            V+GGMDALAF++F                                      DR QAR+E
Sbjct: 122 TVDGGMDALAFEEFLLEEKRKELEKLAKEQAERERQAEEERRIEADKAAKEEDRLQARLE 181

Query: 394 VETKRETLLPHVKKAVKSVDNVWCIEPTEFKGKDLVRLYYKGGSGPLAQAKEIWIHGGYN 453
           VE ++ET+L  +K AVKS D+VW IEP EFKGKDLVRLYY G SGPL  AKEIWIHGGYN
Sbjct: 182 VERRQETVLQLMKNAVKSNDSVWYIEPGEFKGKDLVRLYYNGSSGPLEHAKEIWIHGGYN 241

Query: 454 NWKDGLSIVERLVKSVLKGGDWWYADVVVPDRALVLDWVFADGPPQNAVVYDNNQLQDFH 513
           NWKDGLSIVERLVKS LKGG WWYADVVVPD+ALVLDWVFADGPPQNA VYDNN   DFH
Sbjct: 242 NWKDGLSIVERLVKSGLKGGAWWYADVVVPDQALVLDWVFADGPPQNAAVYDNNHKLDFH 301

Query: 514 AIVPIAPLDEQYWAEEEQLIYRKLQEDRKLRXXXXXXXXXXXXXXXXXXXXXXXXXFLLS 573
           AIVP+A  D QYW EEEQLIY+KL+E+RKLR                         FLLS
Sbjct: 302 AIVPLATPDAQYWVEEEQLIYQKLREERKLREEAIRVKAEKTARMKAETKEKTLKSFLLS 361

Query: 574 QKHIVFTEPLDVQAGSIVTVFYNPSNTNLKGKPEVWFRCSFNRWSHRIGPLPPQRMLPAD 633
           QKHIVFTEPLD+QAGS VTVFYNPSNTNL GKPEVWFR SFNRWSHR GP PPQRMLPA+
Sbjct: 362 QKHIVFTEPLDIQAGSTVTVFYNPSNTNLNGKPEVWFRGSFNRWSHRNGPFPPQRMLPAE 421

Query: 634 NGTHVKACVKVPLDAYMMDFVFSESESGGVFDNKFGMDYHIPVFGGIVKEPPLHITHIAV 693
           NGTHVK  VKVPLDAYMMDFVFSESE+GGVFDNKFGMDYHIPVFG IVKEPPLHI HIAV
Sbjct: 422 NGTHVKTSVKVPLDAYMMDFVFSESENGGVFDNKFGMDYHIPVFGSIVKEPPLHIIHIAV 481

Query: 694 EMAPIAKC 701
           EMAPIAK 
Sbjct: 482 EMAPIAKV 489


>Medtr2g036080.1 | PPR containing plant-like protein | HC |
            chr2:15308501-15315184 | 20130731
          Length = 1388

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 76/127 (59%), Gaps = 31/127 (24%)

Query: 174  VNESEERTLDYAEIDENVQVKSEETSTASDDRISEEASRRLKLELEQNLRRQEIERIAEE 233
            V +S +R L   EI  NV    EETS A+D RI+EEASR LKL+LE+NL +QEIERIAEE
Sbjct: 1080 VVDSAKRRLSVGEITANVI---EETSAATDGRINEEASRMLKLKLEENLWKQEIERIAEE 1136

Query: 234  NLSQGTKMFVY-PPVVKPDQDIEVYLNKSLSTLSDEPDILIMGAFNDWRWKSFTLRMNRT 292
            NL QGT MF Y PP VKPD+                           +R KSF+ R+N+T
Sbjct: 1137 NLLQGTNMFAYPPPGVKPDR---------------------------YRSKSFSTRLNKT 1169

Query: 293  HLKGDWW 299
            HLK DWW
Sbjct: 1170 HLKDDWW 1176