Miyakogusa Predicted Gene

Lj0g3v0047379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0047379.1 Non Characterized Hit- tr|C5XG60|C5XG60_SORBI
Putative uncharacterized protein Sb03g043600
OS=Sorghu,56.41,6e-19,F-box domain,F-box domain, cyclin-like;
FBOX,F-box domain, cyclin-like; F-box-like,NULL; no
descript,NODE_58450_length_878_cov_48.274487.path1.1
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g092020.1 | F-box-like protein | HC | chr3:41994066-419967...   262   1e-70

>Medtr3g092020.1 | F-box-like protein | HC | chr3:41994066-41996724
           | 20130731
          Length = 162

 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/166 (76%), Positives = 142/166 (85%), Gaps = 4/166 (2%)

Query: 1   MEGLPLEICMNIFCFLDYQHLAVAQQVCKKWKVMASENAIWSNLFLERWGGDRADFYAPT 60
           ME LPLEICM IFCFLD+ HLAV+QQVC+KWK+MAS+NA+WSNLF ERWGGD A FYAP 
Sbjct: 1   METLPLEICMKIFCFLDHTHLAVSQQVCRKWKLMASDNALWSNLFKERWGGDHAAFYAPL 60

Query: 61  GSKSWKDVYEVQDRCDRVGVGLKIIREGCDYYLVHLGEIQQYLGSRKNREQATSQSCHTS 120
           GSKSWK+VYE QDRCDRVG+GLKI+REG DYYLVH GE+Q+YLGSRK R Q    S HTS
Sbjct: 61  GSKSWKEVYEAQDRCDRVGLGLKIVREGSDYYLVHQGEVQRYLGSRKYRRQL---SGHTS 117

Query: 121 SSEKRDLSGEGSLAEERSCRGILDRILFFIGDLEVASAGAKRSRLI 166
           SSE  D +GE S+AEERSCRGILD+ILFFIGDLE AS  AKRSR+I
Sbjct: 118 SSET-DFTGESSVAEERSCRGILDKILFFIGDLEAASVDAKRSRVI 162